References
Antia, N.J., P.J.Harrison, and L.Oliveriar. 1991. The role of dissolved organic nitrogen in phytoplankton nutrition, cell biology and ecology. Phycologia 30:1–89.
Armentano, T.V., M.Robblee, P.Ortner, N.Thompson, D.Rudnick, and J.Hunt. 1994. Science Plan for Florida Bay. Unpublished report provided to the Interagency Working Group on Florida Bay.
Beardall, J., E.Young, and S.Roberts. 2001. Approaches for determining phytoplankton nutrient limitation. Aquatic Sciences 63:44–69.
Berger, R.C. and S.E.Howington. 2002. Discrete Fluxes and Mass Balance in Finite Elements. Journal Hydraulic Engineering. 128(1):87–92.
Boyer, J.N., J.W.Fourqurean and R.D.Jones. 1997. Spatial characterization of water quality in Florida Bay and Whitewater Bay by multivariate analyses: zones of similar influence. Estuaries 20:743– 758.
Boyer, J.N., J.W.Fourqurean, and R.D.Jones. 1999. Seasonal and long-term trends in water quality of Florida Bay (1987–97). Estuaries 22:417–430.
Brand, L. 2002. The transport of terrestrial nutrients to south Florida coastal waters. Pp. 361–413 in The Everglades, Florida Bay, and Coral Reefs of the Florida Keys, J.W.Porter and K.G.Porter, eds. Boca Raton, Fla.: CRC Press.
Burnett, W., J.Chanton, J.Christoff, E.Kontar, S.Krupa, M.Lambert, W.Moore, D.O’Rourke, R.Paulsen, C.Smith, L.Smith, and M.Taniguchi. 2002. Assessing methodologies for measuring groundwater discharge to the ocean. Eos Trans. AGU 83:117, 122–123.
Bush, P.W. and R.H.Johnston. 1988. Ground-water hydraulics, regional flow, and ground-water development of the Floridan Aquifer System in Florida and in parts of Georgia, South Carolina, and Alabama. United States Geological Survey Professional Paper 1403-C. Reston, Va.: U.S. Geological Survey.
Bushaw-Newton, K.L., and M.A.Moran. 1999. Photochemical formation of biologically available nitrogen from dissolved humic substances in coastal marine systems. Aquatic Microbial Ecology 18 (3):285–292.
Bushaw, K.L., R.G.Zepp, M.A.Tarr, D.Schulz-Jander, R.A.Bourbonniere, R.E.Hodson, W.L.Miller, D.A.Bronk, and M.A.Moran. 1996. Photochemical release of biologically available nitrogen from aquatic dissolved organic matter. Nature 381:404–407.
Butler, M.J., J.H.Hunt, W.F.Hernkind, M.J.Childress, R.Bertelsen, W.Sharp, T.Matthews, J.M.Field, and H.G.Marshall. 1995. Cascading disturbances in Florida Bay, USA: Cyanobacteria blooms, sponge mortality, and implications for juvenile spiny lobsters Panulirus argus. Mar. Ecol. Prog. Ser. 129:119–125.
Carlson, P.R., L.A.Yarbro, and T.R.Barber. 1994. Relationship of sediment sulfide to mortality of Thalassia testudinum in Florida Bay. Bulletin of Marine Science 54:733–746.
Carlsson, P. and E.Granéli. 1998. Availability of humic bound nitrogen for coastal phytoplankton. Estuarine Coastal Shelf Sci. 36:433–447.
Carlsson, P., E.Granéli, and A.Z.Segatto. 1999. Cycling of biologically available nitrogen in riverine humic substances between marine bacteria, a heterotrophic nanoflagellate and a photosynthetic dinoflagellate. Aquatic Microbial Ecology 18(1):23–26.
Carlsson, P., A.Z.Segatto, and E.Granéli. 1993. Nitrogen bound to humic matter of terrestrial origin—a nitrogen pool for coastal phytoplankton? Marine Ecology Progress Series 97:105–116.
Cerco, C.F., B.W.Bunch, A.M.Teeter, and M.S.Dortch. 2000. Water Quality Model of Florida Bay. ERDC/ELTR-00–10, U.S. Army Engineer Research and Development Center, Vicksburg. Online. Available at http://www.wes.army.mil/el/elpubs/pdf/trel00-10.pdf. Accessed March 2002.
Chau, K.W. and H. .S.Jin. 1995. Numerical solution of two-layered, two-dimensional tidal flow in boundary-fitted orthogonal curvilinear coordinate system. Int. J. Numerical Methods in Fluids 21:1087–1107.
Chippada, S., C.N.Dawson, M.L.Martinez, and M.F.Wheeler. 1998. A projection method for constructing a mass conservative velocity field. Computer Methods in Applied Mechanics and Engineering, 157:1–10.
Comprehensive Everglades Restoration Plan (CERP). 2001. Project Management Plan: Florida Bay and Florida Keys Feasibility Study (third draft) Online. Available at http://www.evergladesplan.org/pm/program/program_docs/pmp_study_florida/cerp_fb_fk.pdf. Accessed January 30, 2002.
Corbett, D.R., J.Chanton, W.Burnett, K.Dillon, C.Rutkowski, and J.W.Fourqurean. 1999. Patterns of groundwater discharge into Florida Bay. Limnol. Oceanogr. 44:1045–1055.
Corbett, D.R., K.Dillon, W.Burnett, and J.Chanton. 2000. Estimating the groundwater contribution into Florida Bay via natural tracers, 222Rn and CH4. Limnol. Oceanogr. 45:1546–1557.
Cosby, B.J., Nuttle, W.K., and J.W.Fourqurean. 1999. FATHOM: Model description and initial application to Florida Bay, project completion report. National Park Service, U.S. Dept. of Interior, Washington, D.C.
Cosby, B.J., W.K.Nuttle, and J.W.Fourqurean. In prep. A hydrologic model of Florida Bay based on basin water balances and frictional flows over shoals. For submission to Water Resources Research.
Cunningham, K.J., D.F.McNeill, L.A.Guertin, T.M.Scott, P.F.Ciesielski, and L.de Verteuil. 1998. New Tertiary stratigraphy for the Florida Keys and southern peninsula of Florida. Geological Society of America Bulletin 110:231–258.
D’Sa, E.J., J.B.Zaitzeff, C.S.Yentsch, J.L.Miller and R.Ives. 2002. Rapid remote assessments of salinity and ocean color in Florida Bay. Pp. 451–459 in The Everglades, Florida Bay, and Coral Reefs of the Florida Keys, J.W.Porter and K.G.Porter, eds. Boca Raton, Fla.: CRC Press.
Davis, J.R., and Y.P.Sheng. 1996. Modeling Florida Bay Circulation. Presented at the Second Scientific Symposium on Florida Bay, Florida Sea Grant, Key Largo, Florida, December 1996.
Davis III, S.E., D.L.Childers, J.Cable, J.W.Day Jr., D.T.Rudnick, and F.H.Sklar. 2002. Event driven nutrient dynamics in a Southern Everglades mangrove creek. EOS. Trans. AGU 83(19), Spring Meet. Suppl., Abstract H41B-06.
Davis, S.M., L.H.Gunderson, W.A.Park, J.R.Richardson, and J.E.Mattson. 1994. Landscape dimensions, composition, and function in a changing Everglades ecosystem. Pp. 419–444 in Everglades—The Ecosystem and its Restoration, S.M.Davis and J.C.Ogden, eds. Delray Beach, Fla.: St. Lucie Press.
Durako, M.D. and K.M.Kuss. 1994. Effects of Labyrinthula infection on the photosynthetic capacity of Thalassia testudinum. Bulletin of Marine Science 54:727–732.
Ehrhardt, N.M. and C.M.Legault. 1999. Pink Shrimp, Farfantepenaeus duorarum, Recruitment Variability as an Indicator of Florida Bay Dynamics . Estuaries 22(2B):471–483.
Fitterman D.V. and M.Deszcz-Pan. 2001. Saltwater Intrusion in Everglades National Park, Florida Measured by Airborne Electromagnetic Surveys. First International Conference on Saltwater Intrusion and Coastal Aquifers: Monitoring, Modeling, and Management. Essaouira, Morocco,
April 23–25, 2001. Rabat, Morocco: Laboratoire d’Analyse des Systèmes Hydrauliques. CD-ROM available at http://www.olemiss.edu/sciencenet/saltnet/.
Florida Coastal Everglades Long Term Ecological Research. 2002. Florida Coastal Everglades LTER Sites. Online. Florida International University. Available at http://fcelter.fiu.edu/overview/FCEslides/pages/Slide29.htm. Accessed August 2002.
Fourqurean, J.W. and M.B.Robblee. 1999. Florida Bay: A history of recent ecological changes. Estuaries 22:345–357.
Fourqurean, J.W., J.C.Zieman, and G.V.N.Powell. 1992. Phosphorus limitation of primary production in Florida Bay: Evidence from the C:N:P ratios of the dominant seagrass Thalassia Testudinum. Limnology and Oceanography 37:162–171.
Galperin, B., M.Haines and M.Luther. 1995. The Design of a Modeling Strategy for Florida Bay. Report to Everglades National Park, National Park Service. Tampa: University of South Florida.
Gilbert, P.S., T.N.Lee, and G.Podesta. 1996. Transport of Anomalous Low-Salinity Waters from the Mississippi River Flood of 1993 to the Straits of Florida . Cont. Shelf Res. 16(8):1065–1085.
Gregg, W.H. 1902. Where, When, and How to Catch Fish on the East Coast of Florida. Buffalo: The Matthews-Northrup Works.
Halley, R.B. 2002. Florida Bay’s Murky Past. Florida Bay Watch Header. Online. Available at http://sofia.usgs.gov/publications/reports/flbay_murky/. Accessed April 1, 2002.
Halley, R.B., and L.M.Roulier. 1999. Reconstructing the history of eastern and central Florida Bay using mollusk-shell isotope records. Estuaries 22:358–368.
Hittle, C. 2001. Quantity, timing, and distribution of freshwater flows into northeastern Florida Bay. Pp. 11–12 in Program and Abstracts, 2001 Florida Bay Science Conference, Key Largo, Fla., April, 2001. Gainesville: University of Florida Office of Conferences and Institutes. Available at http://sofia.usgs.gov/projects/freshwtr_flow/frshwtrflowabfb2001.html.
Hittle, C., E.Patino, and M.Zucker. 2001. Freshwater flow from estuarine creeks into northeastern Florida Bay: U.S. Geological Survey Water-Resources Investigations Report 01–4164, Reston, Va.: U.S. Geological Survey.
Hobbie, J.E., W.C.Boicourt, L.Deegan, K.L.Heck, Jr., S.C.McCutcheon, J.D.Milliman and H.W.Paerl. 1999. Report of the Florida Bay Science Oversight Panel, Perspectives from the 1999 Florida Bay Science Conference. Program Management Committee of the Interagency Florida Bay Science Program . (Available at http://www.aoml.noaa.gov/ocd/sferpm/oversight_report00.html.)
Hobbie, J.E., W.C.Boicourt, K.L.Heck, Jr., E.T.Houde, S.C.McCutcheon and J.Pennock. 2001. Report of the Florida Bay Science Oversight Panel, Perspectives from the 2001 Florida Bay Science Conference. Program Management Committee of the Interagency Florida Bay Science Program. (Available at http://www.aoml.noaa.gov/ocd/sferpm/oversight_report01.html).
Jackson, J.B.C., M.X.Kirby, W.H.Berger, K.A.Bjorndal, L.W.Botsford, B.J.Bourque, R.H.Bradbury, R.Cooke, J.Erlandson, J.A.Estes, T.P.Hughes, S.Kidwell, C.B.Lange, H.S.Lenihan, J.M.Pandolfi, C.H.Peterson, R.S.Steneck, M.J.Tegner and R.R.Warner. 2001. Historical overfishing and the recent collapse of coastal ecosystems. Science 293:629–637.
Jensen, H.S., K.J.McGlathery, R.Marino, and R.W.Howarth. 1998. Forms and availability of sediment phosphorus in carbonate sand of Bermuda seagrass beds. Limnology and Oceanography 43:799–810.
Kaufman, J. 1994. Numerical models of fluid flow in carbonate platforms: Implications for dolomitization. J. Sed. Res. A64:128–139.
Koopmans, D.J., and D.A.Bronk. 2002. Photochemical production of dissolved inorganic nitrogen and primary amines from dissolved organic nitrogen in waters of two estuaries and adjacent surficial groundwaters. Aquatic Microbial Ecology 26:295–304.
Lal, W.A.M. 1998. Simulation of Overland and Groundwater Flow in the Everglades National Park. Pp. 610–615 in Proceedings of the International Water Resources Engineering Conference, August 3–7, Memphis, Tenn. Reston, Va.: American Society of Civil Engineers.
Lapointe, B.E. and M W.Clark. 1992. Nutrient inputs from the watershed and coastal eutrophication in the Florida Bay Keys. Estuaries 15:465–476.
Lapointe, B.E., W.R.Matzie, and P.J.Barile. 2002. Biotic phase-shifts in Florida Bay and fore reef communities of the Florida Keys: Linkages with historical freshwater flows and nitrogen loading from Everglades runoff, Pp. 629–648 in The Everglades, Florida Bay, and Coral Reefs of the Florida Keys, J.W.Porter and K.G.Porter, eds. Boca Raton, Fla.: CRC Press.
Lee, T.N., E.Williams, E.Johns, D.Wilson, and N.P.Smith. 2002. Transport processes linking south Florida coastal ecosystems. Pp. 309–342 in The Everglades, Florida Bay, and Coral Reefs of the Florida Keys, J.W.Porter and K.G.Porter, eds. Boca Raton, Fla.: CRC Press.
Levesque, V.A. and E.Patino. 2001. Hydrodynamic characteristics of estuarine rivers along the southwestern coast of Everglades National Park. Pp. 23–25 in Program and Abstracts, 2001 Florida Bay Science Conference, Key Largo, Fla., April, 2001. Gainesville: University of Florida Office of Conferences and Institutes.
Li, L., D.A.Barry, E.Stagnitti, and J.Y.Parlange. 1999. Submarine groundwater discharge and associated chemical input to a coastal sea. Water Res. Research 35:3253–3259.
Martin, J.L. and S.C.McCutcheon. 1999. Hydrodynamics and Transport for Water Quality Modeling. New York: Lewis Publishers.
Maybeck, M. 1982. Carbon, nitrogen, and phosphorus transport by world rivers. American J. Sci. 282:401–450.
McCarthy, M., T.Pratum, J.Hedges, and R.Benner. 1997. Chemical composition of dissolved organic nitrogen in the ocean. Nature 390:150–154.
McIvor, C.C., J.A.Ley, and R.D.Bjork. 1994. Changes in freshwater inflow from the Everglades to Florida Bay including effects on biota and biotic processes: a review. Pp. 117–146 in Everglades: The Ecosystem and Its Restoration, S.M.Davis and J.C.Ogden, eds. Delray Beach, Fla.: St. Lucie Press.
McPherson, B.F., and R.Halley. 1996. The south Florida environment—A region under stress. U.S. Geological Survey Circular 1134. Reston, Va.: U.S. Geological Survey.
Light, S.S., and J.W.Dineen. 1994. Water control in the Everglades: A historical perspective. Pp. 47–84 in Everglades—The Ecosystem and its Restoration, S.M.Davis and J.C.Ogden, eds. Delray Beach, Fla.: St. Lucie Press.
Nuttle, W.K., J.W.Fourqurean, B.J.Cosby, J.C.Zieman, and M.B.Robblee. 2000. Influence of net freshwater supply on salinity in Florida Bay. Water Resources Research 36:1805–1822.
Ortner, P., T.N.Lee, P.Milne, R.Zika, M.E.Clarke, G.P.Podesta, P.Swart, P.A.Tester, L.P.Atkinson and W.Johnson. 1995. Mississippi River flood waters that reached the Gulf Stream. J. Geophys. Res, 100(C7):13595–13601.
Pardo, L.H., C.T.Driscoll, and G.E.Likens. 1995. Patterns of nitrate loss from a chronosequence of clear-cut watersheds. Water Air Soil Pollution 85:1659–1664.
Patino, E. and C.Hittle. 2000. Magnitude and distribution of flows into Northeastern Florida Bay. U.S. Department of the Interior, USGS Fact Sheet FS-030–00. Washington, D.C.: USGS.
Prager, E.J. and R.B.Halley. 1999. The Influence of Seagrass on Shell Layers and Florida Bay Mudbanks. Journal of Coastal Research 15:1151–1162.
Price, R.M., P.K.Swart, and W.K.Nuttle. 2001. Estimating evaporation rates in Florida Bay. Pp. 29–30 in Program and Abstracts, 2001 Florida Bay Science Conference, Key Largo, Fla., April, 2001. Gainesville: University of Florida Office of Conferences and Institutes.
Reyes, E., J.Cable, J.W.Day, D.Rudnick, F.Sklar, C.Madden, S.Kelly, C.Coronado-Molina, S.Davis and D.Childers. 2001a. Nutrient Dynamics in the Mangrove Wetlands of the Southern Everglades—5 Year Project Overview. Pp. 93–95 in Program and Abstracts, 2001 Florida Bay Science Conference, Key Largo, Fla., April, 2001. Gainesville: University of Florida Office of Conferences and Institutes.
Reyes, E., J.W.Day, S.Davis, and C.Coronado-Molina. 2001b. Nutrient Dynamics and Exchange within a Mangrove Creek and Adjacent Wetlands in the Southern Everglades. Pp. 91–92 in
Program and Abstracts, 2001 Florida Bay Science Conference, Key Largo, Fla., April, 2001. Gainesville: University of Florida Office of Conferences and Institutes.
Riviere, B. and M.F.Wheeler. 1999. Locally Conservative Algorithms for Flow. Proceedings of Mathematics of Finite Elements and Applications MAFELAP 1999, ed. J.Whiteman, pp. 29–46, Elsevier, Amsterdam.
Robblee, M.B., T.R.Barber, P.R.Carlson, M.J.Durako, J.W.Fourqurean, L.K.Muehlstein, D.Porter, L.A.Yarbro, R.T.Zieman, and J.C.Zieman. 1991. Mass mortality of the tropical seagrass Thalassia testudinum in Florida Bay (USA). Mar. Ecol. Prog. Ser. 71:297–299.
Roig, L.C. 1996. CEWES Hydrodynamic Modeling of Florida Bay. Overheads, Florida Bay Interagency Modeling Workshop, Marathon, Fla., April, 1996.
Rudnick, D.T., Z.Chen, D.L.Childers, J.N.Boyer, and T.D.Fontaine, III. 1999. Phosphorus and nitrogen inputs to Florida Bay: The importance of the Everglades watershed. Estuaries 22:398–416.
Sanford, W.W., F.F.Whitaker, P.L.Smart, and G.Jones. 1998. Numerical analysis of seawater circulation in carbonate platforms: I. Geothermal convection. Am. J. Science 298:801–828.
Schaffranek, R.W., J.L.Jenter, C.D.Langevin and E.D.Swain. 2001. The tides and inflows in the mangroves of the Everglades project. Pp. 37–39 in Program and Abstracts, 2001 Florida Bay Science Conference, Key Largo, Fla., April, 2001. Gainesville: University of Florida Office of Conferences and Institutes.
Sheng, Y.P., J.R.Davis, and Y.Liu. 1995. A Preliminary Modeling Study on Circulation and Transport in Florida Bay. Final Report to the Everglades National Park and Dry Tortugas National Park, National Park Service. Gainesville: Coastal & Oceanographic Engineering Department, University of Florida.
Sheng, Y.P., J.R.Davis and Y.Liu. 1996. Circulation and Transport in Hypersaline Florida Bay. Proceedings of the 25th International Conference on Coastal Engineering. ASCE.
Seitzinger, S.P. and R.W.Sanders. 1997. Contribution of dissolved organic nitrogen from rivers to estuarine eutrophication. Marine Ecology Progress Series 159:1–12.
Seitzinger, S.P., R.W.Sanders, and R.Styles. 2002. Bioavailability of DON from natural and anthropogenic sources to estuarine plankton. Limnol. Oceanogr., 47:353–366.
Sklar, F.H. and J.A.Browder. 1998. Coastal environmental impacts brought about by alterations to freshwater flow in the Gulf of Mexico. Environmental Management 22, 547–562.
Sklar, F., C.McVoy, R.VanZee, D.E.Gawlik, K.Tarboton, D.Rudnick, and S.Miao. 2002. The effects of altered hydrology on the ecology of the Everglades. Pp. 39–82 in The Everglades, Florida Bay, and Coral Reefs of the Florida Keys, J.W.Porter and K.G.Porter, eds. Boca Raton, Fla.: CRC Press.
Smith, N.P. and Pitts. 2002. Regional-scale and long-term transport patterns in the Florida Keys. Pp. 343–360 in The Everglades, Florida Bay, and Coral Reefs of the Florida Keys, J.W.Porter and K.G.Porter, eds. Boca Raton, Fla.: CRC Press.
South Florida Water Management District (SFWMD). 1998. Everglades Annual Report. West Palm Beach, Fla.: SFWMD.
Stepanauskas, R., L.Leonardson, and L.J.Tranvik. 1999. Bioavailability of wetland-derived DON to freshwater and marine bacterioplankton. Limnology and Oceanography 44(6):1477–1485.
Tarr, M.A., W.W.Wang, T.S.Bianchi, and E.Engelhaupt. 2001. Mechanisms of ammonia and amino acid photoproduction from aquatic humic and colloidal matter. Water Research 35:3688–3696.
Tomas, C.R., B.Bendis, and K.Johns. 1999. Role of nutrients in regulating plankton blooms in Florida Bay. Pp. 323–337 in The Gulf of Mexico Large Marine Ecosystem: Assessment, Sustainability, and Management, H.Kumpf, K.Steidinger, and K.Sherman, eds. Maiden, Mass.: Blackwell Science.
Top, Z., L.E.Brand, R.D.Corbett, W.Burnett, and J.Chanton. 2001. Helium and radon as tracers of groundwater input into Florida Bay. J. Coastal Research 17:859–868.
U.S. Army Corps of Engineers (USACE). 2002. Cape Sable Seaside Sparrow Reasonable and Prudent Alternatives Modeling; South Florida Water Management Model, Regional Hydrologic Performance Measures. Online. USACE Jacksonville District. Available at http://hpm.saj.usace.army.mil/csssweb/frame2/pmg/enp/enp.htm. Accessed August 2002.
U.S. Army Corps of Engineers (USACE). 1999. Central and Southern Florida Project Comprehensive Review Study, Final Integrated Feasibility Report and Programmatic Environmental Impact Statement. Jacksonville: USACE.
Wang, J.D. and C.Monjo. 1995. A Study to Define Model and Data Needs for Florida Bay. Technical Report, Applied Marine Physics, Rosenstiel School of Marine and Atmospheric Science, University of Miami, Miami, Fla.
Wiegner, T.N., and S.P.Seitzinger. 2001. Photochemical and microbial degradation of external dissolved organic matter inputs to rivers. Aquatic Microbial Ecology 24:27–40.
Wright, A.L., and K.R.Reddy. 2001. Phosphorus loading effects on extracellular enzyme activity in Everglades wetland soils. Soil Science Society of America Journal 65:588–595.
Zieman, J.C., J.W.Fourqurean, and R.L.Iverson. 1988. Distribution, abundance and productivity of seagrasses and macroalgae in Florida Bay. Bull. Mar. Sci. 44:292–311.
Zieman, J.C., J.W.Fourqurean and T.A.Frankovich. 1999. Seagrass die-off in Florida Bay: Long-term trends in abundance and growth of turtle grass, Thalassia testudinum. Estuaries 22:460–470.