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Systematics and the Origin of Species: On Ernst Mayr's 100th Anniversary (2005)
National Academy of Sciences (NAS)

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. "Part II--DISCERNING RECENT DIVERGENCE: 6 Speciation in Birds: Genes, Geography, and Sexual Selection--SCOTT V. EDWARDS, SARAH B. KINGAN, JENNIFER D. CALKINS, CHRISTOPHER N. BALAKRISHNAN, W. BRYAN JENNINGS, WILLIE J. SWANSON, AND MICHAEL D. SORENSON." Systematics and the Origin of Species: On Ernst Mayr's 100th Anniversary. Washington, DC: The National Academies Press, 2005.

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Systematics and The Origin of Species: On Ernst Mayr’s 100th Anniversary

neutral or selective means (akin to finding a fixed diagnostic phenotypic trait), may be a reasonable criterion for delimiting species.

It is certain that molecular approaches will continue to play an important role in species delimitation. However, the battle over species delimitation between the nuclear and mitochondrial genomes, and between the BSC and PSC, will have no victor. Nuclear gene trees will not provide enough phylogenetic resolution to satisfy avian systematists. Furthermore, the high levels of recombination detected in the first surveys of avian SNP variation appear prohibitive for standard phylogenetic analysis (Edwards and Dillon, 2004; International Chicken Polymorphism Map Consortium, 2004). On the other hand, in our view, maternally inherited mtDNA can never capture enough of a species history to delimit species on its own. Although mtDNA will frequently deliver clean phylogeographic breaks within avian species, these breaks need not have their origin in reproductive isolation (Irwin, 2002) and may in some cases be driven by natural selection (Hudson and Turelli, 2003). These same species showing clean mitochondrial breaks will frequently look very messy with regard to nuclear gene splits, as decades of allozyme analyses have already confirmed. We suggest that, despite its disproportionate contribution to revealing phylogeographic patterns and its ability to reflect cessation of female gene flow more rapidly than nuclear genes, mtDNA should not have priority over nuclear genes in avian species delimitation. Ours is a generation of avian systematists raised primarily on single locus analyses of avian phylogeny and divergence. But nuclear genes can and should be interrogated in questions of avian taxonomy, even if the interpretation of nuclear histories and the contrast with mtDNA histories will be challenging.

The Role of Song in Allopatric and Sympatric Speciation

As suggested by Mayr (1942), divergence of populations in allopatry appears to be the dominant mode of speciation in birds. Molecular phylogenies have provided new opportunities for testing alternative geographic models, and avian sister taxa generally meet the expectation of having allopatric distributions, whether because of vicariance or dispersal (Drovetski et al., 2004; Pereira and Baker, 2004; Voelker, 1999; Zink et al., 2000). Current distributions, however, do not necessarily reflect the geo-

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Front Matter (R1-R14)
1 Introductory Essay: Systematics and the Future of Biology--EDWARD O. WILSON (1-4)
Part I--THE ORIGINS OF SPECIES BARRIERS: 2 The Genetic Basis of Reproductive Isolation: Insights from Drosophila--H. ALLEN ORR (5-23)
3 Inter-Locus Antagonistic Coevolution as an Engine of Speciation: Assessment with Hemiclonal Analysis--WILLIAM R. RICE, JODELL E. LINDER, URBAN FRIBERG, TIMOTHY A. LEW, EDWARD H. MORROW, AND ANDREW D. STEWART (24-45)
4 Chromosome Speciation: Humans, Drosophila, and Mosquitoes--FRANCISCO J. AYALA AND MARIO COLUZZI (46-68)
5 Developmental Plasticity and the Origin of Species Differences--MARY JANE WEST-EBERHARD (69-90)
Part II--DISCERNING RECENT DIVERGENCE: 6 Speciation in Birds: Genes, Geography, and Sexual Selection--SCOTT V. EDWARDS, SARAH B. KINGAN, JENNIFER D. CALKINS, CHRISTOPHER N. BALAKRISHNAN, W. BRYAN JENNINGS, WILLIE J. SWANSON, AND MICHAEL D. SORENSON (91-119)
7 Critical Review of Host Specificity and Its Coevolutionary Implications in the Fig/Fig-Wasp Mutualism--CARLOS A. MACHADO, NANCY ROBBINS, M. THOMAS P. GILBERT, AND EDWARD ALLEN HERRE (120-142)
8 Evolutionary Animation: How Do Molecular Phylogenies Compare to Mayr’s Reconstruction of Speciation Patterns in the Sea?--STEPHEN R. PALUMBI AND H. A. LESSIOS (143-161)
9 Mayr, Dobzhansky, and Bush and the Complexities of Sympatric Speciation in Rhagoletis--JEFFREY L. FEDER, XIANFA XIE, JUAN RULL, SEBASTIAN VELEZ, ANDREW FORBES, BRIAN LEUNG, HATTIE DAMBROSKI, KENNETH E. FILCHAK, AND MARTIN ALUJA (162-181)
10 On the Origin of Lake Malawi Cichlid Species: A Population Genetic Analysis of Divergence--YONG-JIN WON, ARJUN SIVASUNDAR, YONG WANG, AND JODY HEY (182-200)
Part III--THE NATURE OF SPECIES AND THE MEANING OF ‘‘SPECIES’’: 11 A Multidimensional Approach for Detecting Species Patterns in Malagasy Vertebrates--ANNE D. YODER, LINK E. OLSON, CAROL HANLEY, KELLIE L. HECKMAN, RODIN RASOLOARISON, AMY L. RUSSELL, JULIE RANIVO, VOAHANGY SOARIMALALA, K. PRAVEEN KARANTH, ACH (201-228)
12 Examining Bacterial Species Under the Specter of Gene Transfer and Exchange--HOWARD OCHMAN, EMMANUELLE LERAT, AND VINCENT DAUBIN (229-242)
13 Ernst Mayr and the Modern Concept of Species--KEVIN DE QUEIROZ (243-264)
Part IV--GENOMIC APPROACHES AND NEW INSIGHTS ON DIVERSITY: 14 Decoding the Genomic Tree of Life--ANNE B. SIMONSON, JACQUELINE A. SERVIN, RYAN G. SKOPHAMMER, CRAIG W. HERBOLD, MARIA C. RIVERA, AND JAMES A. LAKE (265-285)
15 Prospects for Identifying Functional Variation Across the Genome--STUART J. MACDONALD AND ANTHONY D. LONG (286-306)
16 Genetics and Genomics of Drosophila Mating Behavior--TRUDY F. C. MACKAY, STEFANIE L. HEINSOHN, RICHARD F. LYMAN, AMANDA J. MOEHRING, THEODORE J. MORGAN, AND STEPHANIE M. ROLLMANN (307-331)
17 Genomes, Phylogeny, and Evolutionary Systems Biology--MÓNICA MEDINA (332-350)
Index (351-368)