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Systematics and the Origin of Species: On Ernst Mayr's 100th Anniversary (2005)
National Academy of Sciences (NAS)

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. "Part II--DISCERNING RECENT DIVERGENCE: 6 Speciation in Birds: Genes, Geography, and Sexual Selection--SCOTT V. EDWARDS, SARAH B. KINGAN, JENNIFER D. CALKINS, CHRISTOPHER N. BALAKRISHNAN, W. BRYAN JENNINGS, WILLIE J. SWANSON, AND MICHAEL D. SORENSON." Systematics and the Origin of Species: On Ernst Mayr's 100th Anniversary. Washington, DC: The National Academies Press, 2005.

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Systematics and The Origin of Species: On Ernst Mayr’s 100th Anniversary

firm that it is trivial to diagnose species, subspecies, or even populations, even in the presence of abundant shared polymorphisms; a recent study of native and introduced house finch populations in North America was able to readily diagnose populations that had been separated for 50–100 years (Wang et al., 2003), even in the absence of fixed genetic or morphological differences. A naïve evaluation of the genetic patterns in this study would have reasonably inferred the existence of three diagnosable “species” of native and introduced House Finches within the continental United States and Hawaii. A similar ease of diagnosibility using large-scale multilocus approaches is observed for geographic populations of humans (Tishkoff and Kidd, 2004). Thus, diagnosibility will become highly problematic as the resolving power of multilocus approaches increases; the specter of statistical significance without biological significance will be perennial.

The criterion of monophyly advocated by proponents of the phylogenetic species concept (PSC) also suffers from arbitrariness, particularly given the disproportionate emphasis on mtDNA. It is not surprising that a number of workers have advocated the use of mtDNA in species delimitation, given its rapid attainment of reciprocal monophyly (relative to nuclear genes) and frequent ability to diagnose populations (Moore, 1994; Moritz, 1994, 2002; Wiens and Penkrot, 2002). Reciprocal monophyly of mtDNA is attractive because it is an objective criterion that can be applied to any animal system. However, use of mtDNA alone to delimit species has been criticized, because the complete organismal history is not captured and because many other loci in the genome may not exhibit reciprocal monophyly (Hudson and Coyne, 2002; Sites and Crandall, 1997; Wiens and Penkrot, 2002).

Another gene-tree-based criterion for species delimitation calls for finding reciprocal monophyly among a large majority (≈95%) of sampled nuclear genes (Avise and Ball, 1990; Baum and Shaw, 1995). Because nuclear DNA (nDNA) achieves reciprocal monophyly much slower than mtDNA, this criterion is considered conservative (Hudson and Coyne, 2002; Sites and Crandall, 1997). However, to date, and certainly at the time this species concept was put forward, there have been no avian data sets consisting of multiple independent gene trees with which to test the utility of this approach. A recent study of speciation in three Australian grassfinches (Poephila) using 30 independent nuclear loci provides a test of this concept. One of the taxa (Poephila cincta) examined is phenotypically and geographically very distinct from the other two, and its species status has never been questioned (Schodde and Mason, 1999); the two allopatric western lineages of long-tailed finches (Poephila acuticauda/ hecki) are distinguished by fewer characters but are nonetheless diagnosable morphologically and have been designated phylogenetic species (Cracraft, 1986). Coalescent estimates of population divergence times sug-

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Front Matter (R1-R14)
1 Introductory Essay: Systematics and the Future of Biology--EDWARD O. WILSON (1-4)
Part I--THE ORIGINS OF SPECIES BARRIERS: 2 The Genetic Basis of Reproductive Isolation: Insights from Drosophila--H. ALLEN ORR (5-23)
3 Inter-Locus Antagonistic Coevolution as an Engine of Speciation: Assessment with Hemiclonal Analysis--WILLIAM R. RICE, JODELL E. LINDER, URBAN FRIBERG, TIMOTHY A. LEW, EDWARD H. MORROW, AND ANDREW D. STEWART (24-45)
4 Chromosome Speciation: Humans, Drosophila, and Mosquitoes--FRANCISCO J. AYALA AND MARIO COLUZZI (46-68)
5 Developmental Plasticity and the Origin of Species Differences--MARY JANE WEST-EBERHARD (69-90)
Part II--DISCERNING RECENT DIVERGENCE: 6 Speciation in Birds: Genes, Geography, and Sexual Selection--SCOTT V. EDWARDS, SARAH B. KINGAN, JENNIFER D. CALKINS, CHRISTOPHER N. BALAKRISHNAN, W. BRYAN JENNINGS, WILLIE J. SWANSON, AND MICHAEL D. SORENSON (91-119)
7 Critical Review of Host Specificity and Its Coevolutionary Implications in the Fig/Fig-Wasp Mutualism--CARLOS A. MACHADO, NANCY ROBBINS, M. THOMAS P. GILBERT, AND EDWARD ALLEN HERRE (120-142)
8 Evolutionary Animation: How Do Molecular Phylogenies Compare to Mayr’s Reconstruction of Speciation Patterns in the Sea?--STEPHEN R. PALUMBI AND H. A. LESSIOS (143-161)
9 Mayr, Dobzhansky, and Bush and the Complexities of Sympatric Speciation in Rhagoletis--JEFFREY L. FEDER, XIANFA XIE, JUAN RULL, SEBASTIAN VELEZ, ANDREW FORBES, BRIAN LEUNG, HATTIE DAMBROSKI, KENNETH E. FILCHAK, AND MARTIN ALUJA (162-181)
10 On the Origin of Lake Malawi Cichlid Species: A Population Genetic Analysis of Divergence--YONG-JIN WON, ARJUN SIVASUNDAR, YONG WANG, AND JODY HEY (182-200)
Part III--THE NATURE OF SPECIES AND THE MEANING OF ‘‘SPECIES’’: 11 A Multidimensional Approach for Detecting Species Patterns in Malagasy Vertebrates--ANNE D. YODER, LINK E. OLSON, CAROL HANLEY, KELLIE L. HECKMAN, RODIN RASOLOARISON, AMY L. RUSSELL, JULIE RANIVO, VOAHANGY SOARIMALALA, K. PRAVEEN KARANTH, ACH (201-228)
12 Examining Bacterial Species Under the Specter of Gene Transfer and Exchange--HOWARD OCHMAN, EMMANUELLE LERAT, AND VINCENT DAUBIN (229-242)
13 Ernst Mayr and the Modern Concept of Species--KEVIN DE QUEIROZ (243-264)
Part IV--GENOMIC APPROACHES AND NEW INSIGHTS ON DIVERSITY: 14 Decoding the Genomic Tree of Life--ANNE B. SIMONSON, JACQUELINE A. SERVIN, RYAN G. SKOPHAMMER, CRAIG W. HERBOLD, MARIA C. RIVERA, AND JAMES A. LAKE (265-285)
15 Prospects for Identifying Functional Variation Across the Genome--STUART J. MACDONALD AND ANTHONY D. LONG (286-306)
16 Genetics and Genomics of Drosophila Mating Behavior--TRUDY F. C. MACKAY, STEFANIE L. HEINSOHN, RICHARD F. LYMAN, AMANDA J. MOEHRING, THEODORE J. MORGAN, AND STEPHANIE M. ROLLMANN (307-331)
17 Genomes, Phylogeny, and Evolutionary Systems Biology--MÓNICA MEDINA (332-350)
Index (351-368)