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Suggested Citation:"Program." National Academy of Sciences. 2005. Frontiers of Bioinformatics: Unsolved Problems and Challenges. Washington, DC: The National Academies Press. doi: 10.17226/11453.
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FRONTIERS OF BIOINFORMATICS: UNSOLVED PROBLEMS AND CHALLENGES

October 15-17, 2004

Beckman Center of the National Academies

100 Academy Drive, Auditorium

Irvine, California

Organized by Samuel Karlin, David Eisenberg and Russ Altman

PROGRAM

Friday, October 15

7:45 pm

Buses Depart Hyatt Newporter for Beckman Center

8:00-10:00 pm

Registration, Welcome Reception, and Poster Session

10:00 pm

Buses Depart Beckman Center for Hyatt Newporter

Saturday, October 16

7:15 am and

7:45 am

Buses Depart Hyatt Newporter for Beckman Center

7:30 am

Breakfast

Opening Comments

8:30 am

Samuel Karlin (Stanford University)

Session I: Informatics of the Human Genome (8:35 am – 12:10 pm)

Chair

Samuel Karlin (Stanford University)

8:35 am

George Miklos (Secure Genetics Pty Limited and Human Genetic Signatures Pty Limited), Clinical Challenges for Bioinformatics

9:20 am

Mark Gerstein (Yale University), Human Genome Annotation

10:05 am

Break

10:35 am

David Haussler (University of California, Santa Cruz), Using Evolution to Explore the Human Genome

11:20 am

Pavel Pevzner (University of California, San Diego), Transforming Men into Mice (and into Cats, Dogs, Cows, Rats, Chimpanzees, etc.): Evolutionary Lessons from Mammalian Sequencing and Comparative Mapping Projects

12:10 pm

Lunch

Session II: Motifs and Genomics (1:30–3:00 pm)

Chair

Russ Altman (Stanford University)

1:30 pm

Peer Bork (European Molecular Biology Laboratory), Genome Evolution and Protein Networks

2:15 pm

Phil Green (Howard Hughes Medical Institute and University of Washington), Signal and Noise in Genomic Sequences

3:00 pm

Break

Suggested Citation:"Program." National Academy of Sciences. 2005. Frontiers of Bioinformatics: Unsolved Problems and Challenges. Washington, DC: The National Academies Press. doi: 10.17226/11453.
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Session III: Protein-Protein Interactions (3:30–6:00 pm)

Chair

Valerie Daggett (University of Washington)

3:30 pm

David Eisenberg (University of California, Los Angeles), Protein Interactions

4:15 pm

Hanah Margalit (The Hebrew University of Jerusalem), From Cellular Networks to Molecular Interactions and Back

5:00 pm

Shoshana Wodak (Hospital for Sick Children), Protein-Protein Interactions: The Challenge of Predicting Specificity

6:15

Reception and Poster Session

8:00

Dinner

Russell F. Doolittle (University of California, San Diego), Regarding Irreducible Complexities, Introduced by David Eisenberg (University of California, Los Angeles)

10:30

Buses Depart Beckman Center for Hyatt Newporter

Sunday, October 17

7:15 am and

7:45 am

Buses Depart Hyatt Newporter for Beckman Center

7:30 am

Breakfast

Session IV: Regulation with RNA and Aspects of Splicing (8:30–10:45 am)

Chair

David Eisenberg (University of California, Los Angeles)

8:30 am

Sean Eddy (Washington University, St. Louis), The Modern RNA World: Computational Screens for Noncoding RNA Genes

9:15 am

Christopher Burge (Massachusetts Instittue of Technology), Toward an RNA Splicing Code

10:00 am

Christopher Lee (University of California, Los Angeles), Discovering Evolutionary Mechanisms from Multiple Metrics of Molecular Evolution

10:45 am

Break

Session V: Protein Structure (11:00 am – 12:30 pm)

Chair

George Miklos (Secure Genetics Pty Limited and Human Genetic Signatures Pty Limited)

11:00 am

Helen Berman (Rutgers University), Probing the PDB

11:45 am

Michael Levitt (Stanford University), Structural Alignment and Classification of all Known Protein Structure

12:30 pm

Lunch

Session VI: Transcription and Translation in Eukaryotic Genomes (1:30–4:45 pm)

Chair

George Miklos (Secure Genetics Pty Limited and Human Genetic Signatures Pty Limited)

1:30 pm

Volker Brendel (Iowa State University), Comparative Plant Genomics: Evaluation of the Model Genome Concept

2:15 pm

Terry Gaasterland (Rockefeller University and University of California, San Diego/SIO), Lessons from the Arabadopsis Genome: Decoding Evidence for Novel Transcription

3:00 pm

Break

3:15 pm

Russ Altman (Stanford University), Building Genotype Phenotype Data Resources

4:00 pm

Samuel Karlin (Stanford University), Highly Expressed Genes Based on Codon Usage Biases in Archaeal and Eukaryotic Genomes

5:00 pm

Buses Depart Beckman Center for Hyatt Newporter and Orange County Airport

Suggested Citation:"Program." National Academy of Sciences. 2005. Frontiers of Bioinformatics: Unsolved Problems and Challenges. Washington, DC: The National Academies Press. doi: 10.17226/11453.
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Page 1
Suggested Citation:"Program." National Academy of Sciences. 2005. Frontiers of Bioinformatics: Unsolved Problems and Challenges. Washington, DC: The National Academies Press. doi: 10.17226/11453.
×
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