References

Ahn, S.J., J. Costa, and J.R. Emanuel. 1996. PicoGreen quantitation of DNA: effective evaluation of samples pre- or post-PCR. Nucleic Acids Research 24(13):2623-2625.

Bhadury, P., C. Austen, D.T. Bilton, P.J.D. Lambshead, A.D. Rogers, and G.R. Smerdon. 2005. Combined morphological and molecular analysis of individual nematodes through short-term preservation in formalin. Molecular Ecology Notes 5:965-968.

Braslavsky, I., B. Hebert, E. Kartalov, and S.R. Quake. 2003. Sequence information can be obtained from single DNA molecules. Proceedings of the National Academy of Sciences U.S.A. 100:3960-3964.

Bucklin, A., and L.D. Allen. 2004. MtDNA sequencing form zooplankton after long-term preservation in buffered formalin. Molecular Phylogenetics 30:879-882.

CBOL (Consortium for the Barcode of Life). 2006. DNA Barcoding. Accessed on 05/11/06 at http://barcoding.si.edu.

Eisen, E.A., and C.M. Fraser. 2003. Phylogenomics: Intersection of evolution and genomics. Science 300:1706-1707.

Fang, S.-G., Q.-H. Wan, and N. Fujihara. 2002. Formalin removal from archival tissue by critical point drying. Biotechniques 33:604-611.

Gill, P., A.J. Jeffreys, and D.J. Werrett. 1985. Forensic application of DNA “flngerprints.” Nature 318:577-579.

Jackson, D.P., F.A. Lewis, G.R. Taylor, A.W. Boylston, and P. Quirke. 1990. Tissue extraction of DNA and RNA analysis by the polymerase chain reaction. Journal of Clinical Pathology 43:499-504.

King, M-C., J.R. Marks, J.B. Mandell, and the New York Breast Cancer Study Group. 2003. Risks of breast and ovarian cancer due to inherited mutations in BRCA1 and BRCA2. Science 302:643-636.

Quach, N., M.F. Goodman, and D. Shibata. 2004. In vitro mutation artifacts after formalin flxation and error prone translesion synthesis during PCR. BMC Clinical Pathology 4(1):1.



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OCR for page 35
Path to Effective Recovering of DNA from Formalin-Fixed Biological Samples in Natural History Collection: Workshop Summary References Ahn, S.J., J. Costa, and J.R. Emanuel. 1996. PicoGreen quantitation of DNA: effective evaluation of samples pre- or post-PCR. Nucleic Acids Research 24(13):2623-2625. Bhadury, P., C. Austen, D.T. Bilton, P.J.D. Lambshead, A.D. Rogers, and G.R. Smerdon. 2005. Combined morphological and molecular analysis of individual nematodes through short-term preservation in formalin. Molecular Ecology Notes 5:965-968. Braslavsky, I., B. Hebert, E. Kartalov, and S.R. Quake. 2003. Sequence information can be obtained from single DNA molecules. Proceedings of the National Academy of Sciences U.S.A. 100:3960-3964. Bucklin, A., and L.D. Allen. 2004. MtDNA sequencing form zooplankton after long-term preservation in buffered formalin. Molecular Phylogenetics 30:879-882. CBOL (Consortium for the Barcode of Life). 2006. DNA Barcoding. Accessed on 05/11/06 at http://barcoding.si.edu. Eisen, E.A., and C.M. Fraser. 2003. Phylogenomics: Intersection of evolution and genomics. Science 300:1706-1707. Fang, S.-G., Q.-H. Wan, and N. Fujihara. 2002. Formalin removal from archival tissue by critical point drying. Biotechniques 33:604-611. Gill, P., A.J. Jeffreys, and D.J. Werrett. 1985. Forensic application of DNA “flngerprints.” Nature 318:577-579. Jackson, D.P., F.A. Lewis, G.R. Taylor, A.W. Boylston, and P. Quirke. 1990. Tissue extraction of DNA and RNA analysis by the polymerase chain reaction. Journal of Clinical Pathology 43:499-504. King, M-C., J.R. Marks, J.B. Mandell, and the New York Breast Cancer Study Group. 2003. Risks of breast and ovarian cancer due to inherited mutations in BRCA1 and BRCA2. Science 302:643-636. Quach, N., M.F. Goodman, and D. Shibata. 2004. In vitro mutation artifacts after formalin flxation and error prone translesion synthesis during PCR. BMC Clinical Pathology 4(1):1.

OCR for page 35
Path to Effective Recovering of DNA from Formalin-Fixed Biological Samples in Natural History Collection: Workshop Summary Rubin, M.A., R. Dunn, M. Strawderman, and K.J. Pienta. 2002. Tissue microarray sampling strategy for prostate cancer biomarker analysis. American Journal of Surgical Pathology 26(3):312-319. Schander, C., and K.M. Halanych. 2003. DNA, PCR and formalinized animal tissue—A short review and protocols. Organisms, Diversity and Evolution 3(3):195-205. Shedlock, A.M., M.G. Haygood, T.W. Pietsch, and P. Bentzen. 1997. Enhanced DNA extraction and PCR ampliflcation of mitochondrial genes from formalin-flxed museum specimens. Biotechniques 22:394-396. Wickham, C.L., M. Boyce, M.V. Joyner, P. Sarsfleld, B.S. Wilkins, D.B. Jones, and S. Ellard. 2001. Longe PCR products from paraffln-embedded tissue. Qiagen News 3:15-17. Zeman, S.M., D.R. Phillips, and D.M. Crothers. 1998. Characterization of covalent adriamycin DNA adducts. Proceedings of the National Academy of Sciences 95:11561-11565.