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Addley, R.C. 2006. A Mechanistic Daily Net Energy Intake Approach to Modeling Habitat and Growth of Drift-Feeding Salmonids (Particularly the Genus Oncorhynchus). Ph.D. Dissertation, Department of Civil and Environmental Engineering, Utah State University, Logan, UT.

Ahmadi-Nedushan, B., A. St-Hilaire, M. Bérubé, É. Robichaud, N. Thiémonge, and B. Bobée. 2006. A review of statistical methods for the evaluation of aquatic habitat suitability for instream flow assessment. River Res. Appl. 22(5):503-523.

Anderson, K.E., A.J. Paul, E. McCauley, L.J. Jackson, J.R. Post, and R.M.Nisbet. 2006. Instream flow needs in streams and rivers: The importance of understanding ecological dynamics. Front. Ecol. Environ. 4(6):309-318.

Anderson, M.P., and W.W. Woessner. 1992. Applied Groundwater Modeling: Simulation of Flow and Advective Transport. San Diego: Academic Press.

Annear, T., I. Chisholm, H. Beecher, A. Locke, P. Aarrestad, C. Coomer, C. Estes, J. Hunt, R. Jacobson, G. Jobsis, J. Kauffman, J. Marshall, K. Mayes, G. Smith, C. Stalnaker, and R. Wentworth. 2002. Instream Flows for Riverine Resource Stewardship. Cheyenne, WY: Instream Flow Council.

Annear, T., I. Chisholm, H. Beecher, A. Locke, P. Aarrestad, C. Coomer, C. Estes, J. Hunt, R. Jacobson, G. Jobsis, J. Kauffman, J. Marshall, K. Mayes, G. Smith, C. Stalnaker, and R. Wentworth. 2004. Instream Flows for Riverine Resource Stewardship, Rev. Ed. Cheyenne, WY: Instream Flow Council. 267 pp.

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Ayers Associates. 1999. Geomorphic and Sediment Evaluation of the Klamath River, California, Below Iron Gate Dam. Prepared for U.S. Fish and Wildlife Service, Yreka, CA, by Ayers Associates, Fort Collins, CO. March 1999.

Bartholow, J., J. Heasley, J. Laake, J. Sandelin, B.A.K. Coughlan, and A. Moos. 2002. SALMOD: A Population Model for Salmonids: User’s Manual. Version W3. U.S. Geo-



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References Addley, R.C. 2006. A Mechanistic Daily Net Energy Intake Approach to Modeling Habitat and Growth of Drift-Feeding Salmonids (Particularly the Genus Oncorhynchus). Ph.D. Dissertation, Department of Civil and Environmental Engineering, Utah State University, Logan, UT. Ahmadi-Nedushan, B., A. St-Hilaire, M. Bérubé, É. Robichaud, N. Thiémonge, and B. Bobée. 2006. A review of statistical methods for the evaluation of aquatic habitat suitability for instream flow assessment. River Res. Appl. 22(5):503-523. Anderson, K.E., A.J. Paul, E. McCauley, L.J. Jackson, J.R. Post, and R.M.Nisbet. 2006. Instream flow needs in streams and rivers: The importance of understanding ecological dynamics. Front. Ecol. Environ. 4(6):309-318. Anderson, M.P., and W.W. Woessner. 1992. Applied Groundwater Modeling: Simulation of Flow and Advective Transport. San Diego: Academic Press. Annear, T., I. Chisholm, H. Beecher, A. Locke, P. Aarrestad, C. Coomer, C. Estes, J. Hunt, R. Jacobson, G. Jobsis, J. Kauffman, J. Marshall, K. Mayes, G. Smith, C. Stalnaker, and R. Wentworth. 2002. Instream Flows for Riverine Resource Stewardship. Cheyenne, WY: Instream Flow Council. Annear, T., I. Chisholm, H. Beecher, A. Locke, P. Aarrestad, C. Coomer, C. Estes, J. Hunt, R. Jacobson, G. Jobsis, J. Kauffman, J. Marshall, K. Mayes, G. Smith, C. Stalnaker, and R. Wentworth. 2004. Instream Flows for Riverine Resource Stewardship, Rev. Ed. Chey- enne, WY: Instream Flow Council. 267 pp. Antonio, D.B., and R.P. Hedrick. 1995. Effect of water temperature on infections with the microsporidian Enterocytozoon salmonis in Chinook salmon. Dis. Aquat. Org. 22(3):233-236. Ayers Associates. 1999. Geomorphic and Sediment Evaluation of the Klamath River, Califor- nia, Below Iron Gate Dam. Prepared for U.S. Fish and Wildlife Service, Yreka, CA, by Ayers Associates, Fort Collins, CO. March 1999. Bartholow, J., J. Heasley, J. Laake, J. Sandelin, B.A.K. Coughlan, and A. Moos. 2002. SALMOD: A Population Model for Salmonids: User’s Manual. Version W3. U.S. Geo- 226

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228 HYDROLOGY, ECOLOGY, AND FISHES OF THE KLAMATH RIVER BASIN Boyle, J.C. 1976. 50 Years on the Klamath. Medford, OR: Klocker Printery. [Klamath County Museum, Klamath Falls, OR]. Braunworth, W.S., Jr., T. Welch, and R. Hathaway, eds. 2002. Water Allocation in the Klam- ath Reclamation Project, 2001: An Assessment of Natural Resource, Economic, Social, and Institutional Issues with a Focus on the Upper Klamath Basin. Special Report 1037. Corvallis: Oregon State University Extension Service [online]. Available: http://extension. oregonstate.edu/catalog/html/sr/sr1037/report.pdf [accessed Oct. 23, 2007]. Brett, J.R. 1964. The respiratory metabolism and swimming performance of young sockeye salmon. J. Fish Res. Board Can. 21(5):1183-1226. Bridge, J.S. 2003. Rivers and Floodplains: Forms, Processes, and Sedimentary Record. Malden, MA: Blackwell. Burgman, M.A., D.R. Breininger, B.W. Duncan, and S. Ferson. 2001. Setting reliability bounds on habitat suitability indices. Ecol. Appl. 11(1):70-78. Burns, J.W. 1970. Spawning bed sedimentation studies in Northern California streams. Calif. Fish Game 56(4):253-270. CALFED. 2000. Ecosystem Restoration Program Plan, Vol. 3. Strategic Plan for the Ecosys- tem Restoration. Final Programmatic EIS/EIR Technical Appendix. CALFED Bay Delta Program, Sacramento, CA. July 2000 [online]. Available: http://www.delta.dfg.ca.gov/ erp/docs/reports_docs/ERPP_Vol_3.pdf [accessed Feb.12, 2007]. Castleberry, D.T., J.J. Czech, D.C. Erman, D. Hankin, M. Healey, G.M. Kondolf, M. Mangel, M. Mohr, P.B. Moyle, J. Nielsen, T.P. Speed, and J.G. Williams. 1996. Uncertainty and instream flow standards. Fisheries 21(8):20-21. CDFG (California Department of Fish and Game). 1994. Petition to the California Board of Forestry to List Coho Salmon (Oncorhynchus kisutch ) as a Sensitive Species. Cali- fornia Department of Fish and Game [online]. Available: http://www.dfg.ca.gov/nafwb/ pubs/1994/coho_pet.pdf [accessed April 10, 2007] (as cited in Weitkamp et al. 1995). CDFG (California Department of Fish and Game). 1995. Klamath River Basin Fall Chi- nook Salmon Run-Size, In-River Harvest Escapement—1995 Season. Klamath Trinity Program. CDFG (California Department of Fish and Game). 2004. September 2002 Klamath River Fish-Kill: Final Analysis of Contributing Factors and Impacts. California Department of Fish and Game, California Resources Agency, Sacramento. July 2004 [online]. Available: http://www.pcffa.org/KlamFishKillFactorsDFGReport.pdf [accessed June 2006]. Cherry, D.S., S.R. Larrick, J.D. Giattina, K.L. Dickson, and J. Cairns, Jr. 1978. The avoidance response of the common shiner to total and combined residual chlorine in thermally influenced discharges. Pp. 826-837 in Energy and Environmental Stress in Aquatic Sys- tems, J.H. Thorp, and J.W. Gibbons, eds. National Technical Information Service, U.S. Department of Commerce, Washington, DC. Chow, V.T., D.R. Maidment, and L.W. Mays. 1988. Applied Hydrology. New York, NY: McGraw Hill. City-Data.com. 2007. Weaverville-California [online]. Available: www.city-data.com/city/ Weaverville-California.html [accessed April 10, 2007]. City of Klamath Falls. 2007. City of Klamath Falls, Oregon: City Profile [online]. Available: http://www.ci.klamath-falls.or.us/ [accessed April 10, 2007] Coots, M. 1962. Shasta River, Siskiyou County, 1958 King Salmon Count with Yearly Totals From 1930-1961. Marine Resources Administrative Report No. 62-64. California De- partment of Fish and Game, Inland Fisheries Branch. 5 pp. Coots, M. 1973. A Study of Juvenile Steelhead, Salmo gairdenerii gairdernii Richardson, in San Gregorio Creek and Lagoon, San Mateo County, March through August, 1971. California Anadromous Fisheries Branch Administrative Report No. 73-4. Sacramento: California Department of Fish and Game.

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