Moderator: J. Glenn Morris, Jr.
This session of the workshop covered a wide array of topics. Initially, three Iranian speakers—Razieh Yazdanparast, Narges Zali, and Ali G. Moltagh—described studies investigating cancer in Iran that included considerable use of genetic techniques. Volker Mai then discussed a study of intestinal microbiota, including ways in which the microbiota might be affected by environmental factors and ways in which they might affect health. Lu Wang provided a description of the National Institute of Health’s Human Microbiome Project and indicated that a wealth of new information on microbiota may soon emerge.1 The session ended with a lively discussion focused mainly on intestinal microbiota.
Presenter: Razieh Yazdanparast2
This presentation focused on the biological effects of 3-hydrogenkwadaphnin (3-HK). This substance is derived from Dendrostellera lessertii,
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5
Potential Associations Between
Foodborne and Chronic Diseases
moderator: J. glenn morris, Jr.
T
his session of the workshop covered a wide array of topics. Ini-
tially, three Iranian speakers—Razieh Yazdanparast, Narges Zali,
and Ali G. Moltagh—described studies investigating cancer in Iran
that included considerable use of genetic techniques. Volker Mai then
discussed a study of intestinal microbiota, including ways in which the
microbiota might be affected by environmental factors and ways in which
they might affect health. Lu Wang provided a description of the National
Institute of Health’s Human Microbiome Project and indicated that a
wealth of new information on microbiota may soon emerge.1 The session
ended with a lively discussion focused mainly on intestinal microbiota.
SIgNALINg PATHWAYS INVOLVED IN CANCER
Presenter: Razieh Yazdanparast
This presentation focused on the biological effects of 3-hydrogen-
kwadaphnin (3-HK). This substance is derived from dendrostellera lessertii,
1 The workshop planning committee, in consultation with Iranian counterparts and other
participants, extended the scope of the workshop to include recent research findings in the
area of cancer and in potential relationships of gastrointestinal microbiota with chronic dis-
ease. Both topics were viewed as important areas of research of mutual interest.
2Yazdanparast acknowledged financial support from the Research Council of the Univer-
sity of Tehran, the Research Council of the Ministry of Health, and the Research Council of
the National Research Center for Genetic Engineering and Biotechnology. She also acknowl-
edged the assistance of H. Fasehei, M. Abdolmohammadi, H. Sadeghi, M. Mianabadi, A.
Sadeghirizi, A. Meshkini, and M. A. Moosavi.
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PotEntIAl ASSoCIAtIonS
a member of the Thymelaeaceae family of Iranian medicinal plants. The
presentation also covered signaling pathways involved in 3-HK-induced
apoptosis and in the differentiation of the U937 human leukemic cell
line.
Yazdanparast showed a series of slides that demonstrated the anti-
proliferative activity of the plant. In one study, for example, the research-
ers induced breast tumors in rats, treated them with a daily dose of the
crude extract, and found substantial tumor suppression. When they eval-
uated the biological activity of 3-HK versus that of the crude extract with
a battery of cell lines, they found that the effects of the chemical and of the
crude extract were similar (see Figure 5-1). Importantly, they found that
the effect of 3-HK was irreversible and that it showed its effect on prolif-
erating cells but not on resting cells. The latter finding led the researchers
to investigate the signaling pathways that are influenced by 3-HK.
Yazdanparast showed a number of slides that illustrated the results of
studies concerning the cause of the cell death and distinguishing between
adherent cells and suspended cells. The U937 cell line reacted in two dif-
ferent ways to 3-HK: some of the cells went to apoptosis, and some of
Control Crude
3-HK
FIgURE 5-1 Effects of 3-hydrogenkwadaphnin (3-HK) and crude extract from
dendrostellera lessertii on cell proliferation.
SOURCE: R. Yazdanparast, University of Tehran.
5-1
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FoodBoRnE dISEASE And PUBlIC HEAltH
them were guided to differentiation. Further investigations supported the
finding that 3-HK has the ability to affect the cells in both ways.
Additional slides illustrated how specific inhibitors blocked the activ-
ity of JNK and P38. One conclusion from the studies is that JNK and P38
are involved in apoptosis, which occurs through the FAS/mitochondrial
signaling pathway and includes P21 cleavage. Another conclusion is that
differentiation involves extracellular signal-regulated kinase (ERK), but
caspase is not involved, and P21 is up-regulated rather than cleaved.
Yazdanparast is currently involved in studies concerned with how 3-HK
works among the apoptotic and differentiating cells with respect to sig-
naling elements, focusing on the fate of P21. She expects that this work
will lead to the use of 3-HK as an anti-proliferative drug in the treatment
of leukemia.
MOLECULAR AND gENETIC ASPECTS OF
COLORECTAL CANCER
Presenter: narges Zali
In her presentation, Narges Zali briefly described her research on
the molecular and genetic aspects of detection of two forms of colorectal
cancer: hereditary nonpolyposis colorectal cancer (HNPCC) and famil-
ial adenomatous polyposis (FAP). By providing a number of definitions
throughout her talk, Zali helped the audience become more familiar with
the molecular and genetic approaches to understanding diseases that
were discussed during the workshop.
Hereditary Nonpolyposis Colorectal Cancer
HNPCC is an inherited form of cancer that affects primarily the colon
and rectum. It is an autosomal dominant cancer-susceptibility syndrome—
that is, a copy of the altered gene inherited from either parent is enough
to increase cancer risk—for which the gene map locus is on chromosome
2, short arm, band 22 to 21. It is associated with germ line mutations in
mismatch repair (MMR) genes. MMR proteins repair problems that arise
during DNA replication, and mutations in the MMR genes damage the
body’s ability to repair the mistakes made during DNA replication, lead-
ing to an increased risk of cancer.
For the study that Narges Zali described, all colorectal cancer patients
3 Narges Zali expressed thanks to the National Academy for Educational Development,
especially to Beverly Attallah, and to the National Academies for the opportunity to pre-
sent her work.
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SCREENING STRATEGY (1)
HNPCC ?
FIgURE 5-2 Genetic tests for the detection of hereditary nonpolyposis colorectal
cancer (HNPCC). IH-negative stands for immunohistochemistry-negative and
means that a specific gene was not expressed.
SOURCE: N. Zali, Shaheed Beheshti University of Medical Sciences.
fig 5-2
from the hospital-based cancer registry at the Research Center for Gastro-
enterology and Liver Diseases were asked to enroll. After receiving the
patients’ informed consent for the procedures and for genetic counseling,
staff collected blood samples and paraffin-embedded blocks of tumoral
tissue that were obtained during surgery. The research team extracted
genomic DNA from blood and tissue and ran a series of genetic tests for
HNPCC, as shown in Figure 5-2.
To help clarify the screening strategy, Narges Zali explained some
of the terms used and showed slides illustrating the findings. Immuno-
histochemistry (IHC) is a technique to detect the presence of a particular
protein in a tissue sample through the use of antibodies to that protein.
With IHC, one can analyze the expression of MMR genes by looking for
their products, the various MMR proteins.
MSI occurs when microsatellites (stretches of short, repeated sequences
of DNA) vary in length in an individual. MSI indicates errors occurred
in the DNA replication process and thus a deficiency in the MMR repair
function. Two techniques are available for the detection of MSIs: (1) the
older gel electrophoresis, and (2) the newer and more sensitive fragment
analysis.
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If the IHC finds that a specific gene is not expressed, the next step is
microsatellite instability (MSI) analysis for that gene and then a search for
mutations. If the IHC result is normal and Amsterdam criteria4 are posi-
tive, the next test on the tumor tissue is for MSI, potentially followed by
a genetic analysis of the MMR genes.
If the patient has a positive high MSI, the next step is to sequence and
search for MMR genes (not shown in the figure) using a polymerase chain
reaction (PCR). To date, the researchers have found 20 MMR germ line
mutations in 18 out of 47 families with colorectal cancer. They have also
found several novel mutations.
Familial Adenomatous Polyposis
The research group is also working to determine the molecular epide-
miology of APC/MYH genes among Iranian patients with familial adeno-
matous polyposis (FAP). The group uses a clinical-molecular approach
in the genetic testing of patients with FAP. If examination of the family
tree indicates that the condition is familial, PCR and sequencing are used
to determine whether there are point mutations. If such mutations are
found, the clinician refers the patient for a colonoscopy and for follow up.
For cases in which these mutations are not found, the research group is
investigating a new technique called multiplex ligation-dependent probe
amplification to search for large deletions in the tumor-suppression gene
APC.
SCREENINg OF HIgH-RISK POPULATIONS FOR
COLORECTAL CANCER IN IRAN
Presenter: Ali g. motlagh
Motlagh provided background information about colorectal cancer
in Iran, briefly described molecular events that are associated with the
development of colorectal cancer, discussed the development of technol-
ogy in Iran to detect the genetic mutations that lead to colorectal cancer,
and suggested useful next steps.
Background Information
In Iran, colorectal cancer is the third most common cancer among
women and the fourth most common cancer among men. Sixty-five per-
4Amsterdam criteria are used to identify families that are likely to have hereditary non-
polyposis colorectal cancer.
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cent of the colorectal cancer in Iran is estimated to be sporadic, 25 percent
familial, 4 percent hereditary nonpolyposis colorectal cancer (HNPCC),
1 percent familial adenomatous polyposis (FAP), and 5 percent other.
Genetics and the environment both play a role in the development of
colorectal cancer, but the particular roles vary according to the type of
cancer. In particular, genetic factors are known to play different roles in
different types of colorectal cancer. In sporadic types, for instance, low-
penetrance genes are more important than high-penetrance genes, while
the opposite is true for familial cases.
Molecular Events Associated with Colorectal Carcinogenesis
Two pathways are known to be important in colorectal carcinogen-
esis: the chromosomal instability pathway and the microsatellite instabil-
ity (MSI) pathway. It has been proposed that MSIs result from a deficient
mismatch repair (MMR) system. MSIs are found in the major tumors
of patients with HNPCC as well as in 15 percent of sporadic colorectal
cancers.
Three methods exist for studying alterations of the MMR mecha-
nism: sequencing the involved gene, detection of gene products, and MSI
analysis. Motlagh pointed out that testing for MSI is a powerful method
to screen for HNPCC and that the finding of MSIs in sporadic tumors sug-
gests a more favorable prognosis although the response to chemotherapy
is uncertain.
A person with two or more relatives who have developed colorectal
cancer has a substantially higher risk of developing colorectal cancer
himself or herself, and the cancer may occur at a relatively young age.
Clinical criteria that include family history and the patient’s cancer his-
tory are helpful in identifying those persons who are good candidates for
genetic testing.
A Project to Develop Technology for the Detection of genetic
Mutation for Colorectal Cancer in Iran
Motlagh described a project in Iran aimed at developing and using
technologies for detecting the genetic mutations leading to colorectal
cancer and at establishing a genetic counseling service for high-risk popu-
lations. The project will also establish a gastrointestinal cancer registry
database, develop IHC and MSI techniques, and create other genetic-
analysis capabilities.
Records were reviewed for 600 patients with colorectal cancer from 8
of the 30 provinces of Iran. Software was specially designed for collecting
the data, and the data were added to the cancer registry database. Inves-
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tigators obtained additional data in order to be able to perform survival
analysis, and they traced pedigrees backward and laterally. Amsterdam
II criteria were used to identify HNPCC, and Bethesda guidelines were
used in identifying HNPCC-related neoplasms.
The investigators conducted various genetic tests and found that most
mutations were in MLH1 (a gene that codes for a membrane protein),
which is similar to findings from China, Korea, Finland, Sweden, and
Spain. The phenotype features that the researchers found may have value
in the design of genotype-specific screening.
Future Considerations
Since colorectal cancer is triggered by interactions of genes with the
environment, and since environments differ around the world, achieving
a consensus on screening guidelines may be difficult. Based on the most
recent update of the non-colorectal, non-neuroendocrine guideline and on
recent trials, Motlagh and colleagues suggested that the optimal method
for screening a high-risk population for colorectal cancer would include
• patient evaluation with Bethesda guidelines;
• MSI analysis and IHC testing for MMR protein;
• mutation analysis and patient evaluation with Amsterdam guide-
lines; and
• hypermethylation of MHL1 and BRAF5 mutation analysis.
Because this method would probably not be cost effective, the Iranian
group has mapped out the following three-phase effort to refine and make
effective a screening method for the Iranian population by using a small
sample of patients:
1. Estimate the accuracy of IHC and MSI analysis for the prediction
of the MMR mutation, design a computer model for predicting the MMR
mutation, conduct a cost-effectiveness analysis to identify the most suit-
able screening guidelines for the Iranian population, and search for the
best method to distinguish familial colorectal cancer from HNPCC.
2. Conduct a pilot study of a population at high risk for colorectal
cancer in Tehran province using colonoscopy and laboratory tests, and
estimate the accuracy of these tests for screening the Iranian population
for colorectal cancer.
3. Develop a comprehensive program for risk stratification and risk
modification among those at high risk for colorectal cancer.
5 BRAF is a protein that plays a central role in the growth and survival of cancer cells.
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DIET, MICROBIOTA, AND CARCINOgENESIS
Presenter: Volker mai
Mai provided background information about the intestinal microbiota
and its investigation, briefly described some studies in which he has been
involved, listed desirable characteristics of future studies, and gave a few
closing remarks.
Overview
description of the Intestinal microbiota
The intestinal microbiota could be considered an organ. It consists of
approximately 1011 to 1012 bacterial cells per gram of stool. This means
that humans have 10 times more cells in the form of bacteria than they
have human cells. The gut microbiota has three key functions:
) metabolic: Examples include the fermentation of non-digestible
dietary residue and endogenous mucus, salvage of energy as short-chain
fatty acids, production of vitamin K, and the absorption of ions.
) trophic: This involves development and homeostasis of the immune
system and the control of epithelial cell proliferation and differentiation.
) Protectie: Bacteria may prevent the attachment of pathogens in the
intestines and thus reduce the risk of disease.
the Study of the Intestinal microbiota
Studying the gut microbiota is difficult for a number of reasons. There
is no efficient way to sample from the proximate colon without an initial
cleansing, for example. Mai said that both the lumen material and the bac-
teria that attach to the epithelium are needed to study the gut microbiota,
but that this situation poses challenges. For example, formalin, which is
used to preserve biopsy samples, depletes the mucus layer. Furthermore,
the proportion of organisms that can be cultured is very low, there are
difficulties in speciating bacteria, and the work is very labor intensive.
Recently, molecular analysis methods have opened new avenues in the
study of gut microflora.
Interactions between diet and the microbiota might distort epidemio-
logical observations. For example, if flora associated with a low risk of
certain diseases colonize the intestine, they may efficiently ferment fiber
to create such beneficial end products as butyrate. By contrast, if flora
associated with a high risk of those diseases colonize the intestine, they
may not ferment the dietary fiber. The movement of intact fiber through
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FoodBoRnE dISEASE And PUBlIC HEAltH
the colon, in turn, might deplete the mucus and increase the risk of a
chronic infection. Mai concluded that studying these complex interactions
requires multidisciplinary research involving microbiologists, immunolo-
gists, epidemiologists, and others.
Ongoing Studies
In Mai’s laboratory at the University of Florida in Gainesville, the
methods of studying the intestinal microbiota range from the use of dena-
turing gradient gel electrophoresis to microarrays. The group is using a
“shotgun” method that involves collecting stool, extracting DNA, per-
forming PCR tests, subcloning, and sequencing. This method should
allow the detection of all bacterial species that are present at a concentra-
tion of more than 107 bacteria per gram of stool.
Cancer mortality data show a number of similarities between the
United States and Iran. In both countries, for instance, colorectal cancer
is the third-leading cause of cancer deaths for both men and women. In
the United States, African Americans of both sexes experience higher inci-
dences and higher mortality rates from colorectal cancer than do whites.
For this reason, Mai’s group is especially interested in studying the risk of
colorectal cancer and the potential contributions of environmental factors
to colorectal carcinogenesis among African Americans.
If one is interested in preventing cancer, then focusing on environ-
mental factors means focusing on those factors that can be changed in
order to reduce risk. Current evidence suggests that higher intakes of
folate, calcium, vitamin D, vegetables, and perhaps fiber might reduce the
risk for colorectal cancer. In contrast, the risks for colorectal cancer appear
to be increased by a high body mass index and by the consumption of
the nitrosamines in processed meat and the heterocyclic amines in grilled
meat. Mai’s laboratory has the long-term goal of developing interventions
that modify the intestinal microbiota toward a healthier composition, but
he noted that he is aware that dietary factors have not yet been convinc-
ingly associated with cancer risk.
diet, microbiota, and the Preention of Intestinal Adenomas in Apcmin mice
Mai briefly described a study that looked at the question of whether
diet might affect the gut microbiota and, in turn, affect the development
of cancer in the intestinal tract. The study used ApcMin mice, which are a
standard mouse for studies of human colorectal carcinogesis. The mice
have a genetic predisposition to developing intestinal adenomas at an
early age. The mice were divided into groups including a high-risk-diet
group, a low-risk-diet group, and a set of controls, all of which were fed
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ad libitum, plus another group that was fed the control diet but with a
40 percent calorie restriction. The researchers found that both the low-risk
diet and the calorie-restricted diet reduced the number of polyps in the
mice significantly, but the reductions occurred via different pathways. The
full results of the study suggest that specific dietary interventions reduce
intestinal carcinogenesis, that diet strongly affects the intestinal micro-
biota composition, that some bacteria appear to be associated with lower
risk, and that diet and microbiota likely affect immune function. Mai
provided detailed information to the workshop attendees by distributing
his paper “Intestinal microbiota: A potential diet-responsive prevention
target in ApcMin mice” (Mai et al., 2006).
diet and microbiota Studies in Humans
Mai has conducted a pilot study of 52 African Americans and 46
Caucasians to look for associations between diet and microbiota and to
explore differences in the microbiota between people in the two groups.
One interesting finding was an association between dietary fiber intake
and higher amounts of lactic acid bacteria (which are generally thought
to be beneficial). African Americans had twice as many Bacteroides as did
the Caucasians.
An ongoing colonoscopy screening study may offer an opportunity
for developing collaborations with the Iranians. In this study investiga-
tors are measuring diet, collecting stool samples, recording normal status,
and collecting biopsy samples from subjects with the aim of determining
if specific parts of the gut microbiota are associated with colorectal cancer
risk.
Desirable Characteristics of Future Studies
Several features will be important in future studies of the human
intestinal and fecal microbiota:
• An understanding of the standard dynamic of the microbiota needs
to be developed because epidemiological studies require assurance that
a sample collected at a specific time really is representative of the micro-
biota over time.
• The use of multiple time points would help clarify dynamics.
• Larger studies are needed; to date studies have involved fewer
than 10 people.
• Studies of different populations would provide valuable informa-
tion on variation.
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• Studies of interventions are needed to determine the potential for
modification of the microbiota.
• Standardized methods are needed so that comparisons can be
made between studies.
Closing Remarks
In closing, Mai highlighted the following points:
• Gut microbiota contribute substantially to intestinal physiology
and thus likely to human health.
• The complexity of the gut microbiota and its metabolic abilities and
dynamics are not yet fully understood.
• Microbiota composition is affected by diet. Specific bacteria appear
to be associated with carcinogenesis.
• Future studies need to test specific hypotheses rigorously.
HUMAN MICROBIOME PROJECT
Presenter: lu Wang
The Human Microbiome Project is a U.S. National Institutes of Health
(NIH) Roadmap project. Roadmap projects have been characterized as
high-risk and potentially high-return projects. The Human Microbiome
Project has been funded at a level of slightly more than $100 million for a
5-year period. In his presentation, Lu Wang briefly described the project
and listed its initiatives.
Overview
The human microbiome is the collection of genomes of all the microbes
that inhabit the human body. Several hundred distinct phyla of microbes
live in the human body. As mentioned previously by Mai, the human
microbiota is thought to have a profound influence on human health via
various effects that it has on human physiology and nutrition, immunity,
and development.
Current evidence indicates that the human microbiome has different
patterns at different anatomical sites. New sequencing technology makes
it possible to analyze the genomic content of a human microbiome. The
publication the new Science of metagenomics: Reealing the Secrets of our
microbial Planet provides a useful perspective on this type of research
(NRC, 2007).
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The goal of the Human Microbiome Project is to characterize the
microbes that inhabit the human body and to examine whether changes
in the microbiome can be correlated with disease. In fiscal year 2008, the
NIH will award cooperative agreements and grants to support the project.
The project’s policy will be to release immediately the data it collects and
the resources it develops.
The project will address the following questions:
• Is there a core microbiome? There is currently a wide divergence
of opinions on this matter.
• How much variation in the microbiome is there among individu-
als? Answering this question may require taking into account the various
environments to which people are exposed.
• Can changes in microbial populations be connected with factors
such as disease, age, diet, antibiotics, and sex?
• Can information about an individual’s microbiome be demon-
strated to offer any diagnostic or therapeutic benefits?
Initiatives of the Human Microbiome Project
A broadly based working group of the NIH identified the following
seven initiatives that the Human Microbiome Project will support:
1. Developing a reference set of microbial genome sequences and a
preliminary characterization of the human microbiome, with a focus on
healthy individuals
2. Investigating relationships between changes in the human micro-
biome and disease
3. Developing new microbial genomics technologies
4. Developing new tools for the computational analysis of specific
types of data
5. Establishing a data analysis and coordinating center with func-
tions related to tracking, storage, and distribution of data, coordination
of data analyses, the development of data-retrieval tools, coordination of
standard development, and establishing a mechanism to display project
activities
6. Establishing a central, reasonably priced resource for materials,
reagents, cultured organisms, etc.
7. Addressing ethical, legal, and social implications of Human Micro-
biome Project research, covering topics such as clinical and health implica-
tions, forensic uses of microbiome profiles, bioterrorism and bio-defense
applications, and privacy issues
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Closing Remarks
The group that is responsible for implementing the Human Micro-
biome Project includes four institute directors and representatives from
all 27 NIH institutes. The website http://nihroadmap.nih.gov/hmp/
provides further information about the NIH Roadmap Human Micro-
biome Project and also posts announcements about new requests for
applications.
DISCUSSION
moderator: J. glenn morris, Jr.
The participants spent considerable time discussing studies of the
intestinal microbiota and their possible relationship with the development
of disease. It was emphasized that this is an exciting new field made pos-
sible by technological advances and that the development of new genetic
capabilities is leading to major changes in the concept of microbiology.
Because the field is very new, there are many questions for which defini-
tive answers are not yet available. Topics that sparked special interest
include the relationships of the microbiota to the development of chronic
disease and the ways that this might be studied, the effects of various fac-
tors on the microbiota in the intestinal lumen, the identification of organ-
isms that make up the microbiota, and potential future studies.
Relationships of the Microbiota to the Development of
Chronic Disease
Epidemiological evidence indicates that rates of colorectal cancer are
much lower in Africa and in some other parts of the developing world
than they are in the industrialized countries. Mohammad Reza Zali noted
that food in the developing countries tends to contain more bacteria than
food in industrialized countries, which could lead the residents of devel-
oping countries to have higher numbers of bacteria in their intestinal
tracts than do residents of industrialized countries. It also was noted that
rates of colon cancer increase when people move to more industrialized
countries.
Mai explained that it is much more difficult to study the relationships
of microbiota in the intestinal lumen with the development of colorectal
cancer or with other chronic diseases than it was to study Helicobacter and
its association with disease. The stomach environment is essentially ster-
ile, except for the presence of Helicobacter itself, which made it relatively
easy to isolate and identify the bacterium. The intestines, by contrast, have
a population of microorganisms that is vastly more complex.
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It is possible that shifts in the proportions of various microbial groups
are related to changes in disease risk. Because the studies of the intestinal
microbiota conducted by Mai’s group have so far involved subjects under-
going screening colonoscopies rather than patients with cancer, however,
his group has not yet been able to show any associations between the
microbiota and colon cancer.
Effects of Various Factors on the Microbiota in the Intestinal Lumen
Cleansing and Antibiotics
The preparation of the colon for a colonoscopy has a major effect on
the bacteria that can be obtained in a biopsy sample. The bacteria that
have the ability to attach to the inner mucus layer and thus remain in
the colon may be completely irrelevant to health risks. For this reason,
fecal samples may be more useful to a study of the microbiota than are
biopsy samples. If it were possible to sample the intestinal contents of a
corpse right after a person’s death, one could compare the composition of
the microbiota at different parts of the intestine. Clearly, the study of the
intestinal microbiota is complicated by the difficulty of obtaining samples
from the proximal intestine.
It is not clear what effect antibiotics have on the overall composition
of the microbiota over time, and the findings will depend in part on the
sensitivity of the technique used. Mai suggested that antibiotics have a
smaller effect on the intestinal microflora than does colonoscopy.
dietary Change
The period of time required to stabilize the microbiota after a drastic
dietary change (such as a change from omnivore to vegetarian or the
addition of a probiotic substance to one’s diet) has not been studied well.
Initial studies suggest that about seven days may be required for the
microbial composition to stabilize after it has been seriously disrupted.
When the substrate in the intestines changes, the bacteria that are best
adapted to use the substrate gain energy and appear to dominate rather
quickly. Depending on which bacteria are present in high proportions,
the concentrations of compounds present in the intestinal lumen change,
and this may influence susceptibility to cancer. It is an extremely complex
system, and its investigation has only recently begun to receive support
from the NIH.
Some participants expressed interest in studying the effects that mal-
nutrition has on the composition of the microbiota and how those changes
might affect the immune system, potentially resulting in adverse health
outcomes.
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Identification of Organisms That Make Up the Microbiota
A very large percentage of the microorganisms populating the intes-
tine cannot be cultured. Thus the study of the microbiota now gener-
ally involves extracting DNA from a stool sample and identifying both
anaerobes and aerobes using genetic techniques. The genetic studies have
raised questions about the concept of bacterial species. There is much
genetic exchange, and the relationship of different molecular signatures
to different bacteria is not completely clear. Morris indicated that a tre-
mendous revolution is just beginning to occur in our understanding of the
composition of microflora of the human gastrointestinal tract.
Although Mai focused his discussion on the potential role of bacte-
ria in the development of colorectal cancer, his group has not ruled out
a potential role for yeasts. However, because the number of yeasts per
person is much smaller than the number of bacteria (on the order of 105
or 106 for yeast, compared with 1011 or 1012 for bacteria), few yeasts are
found in microscopic studies of the gut microflora. Special methods will
be needed to study the involvement of yeasts.
Future Directions
The evidence suggests that very complex metabolic and biochemical
reactions are occurring continually within our intestines and that distur-
bances of the microbiota might substantially change a person’s ability to
handle specific toxins, metabolic by-products, or other substances in the
intestine. This subject lies within the intersection of foodborne disease, the
bacteria in the intestines, and the occurrence of chronic disease. Morris
said that there is a need to conduct studies in locations outside the United
States in order to understand the differences that may arise in different
geographic areas. Considering the development that Iran is undergo-
ing, Mai suggested that it could be a promising region for the study of a
variety of factors that affect the risk of developing colorectal cancer. Such
study also would have the benefit of helping identify the environmental
causes of cancer that could be controlled.