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In the Light of Evolution, Volume II: Biodiversity and Extinction (2008)
National Academy of Sciences (NAS)

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. "15 Three Ambitious (and Rather Unorthodox) Assignments for the Field of Biodiversity Genetics--JOHN C. AVISE." In the Light of Evolution, Volume II: Biodiversity and Extinction. Washington, DC: The National Academies Press, 2008.

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In the Light of Evolution: Volume II—Biodiversity and Extinction
Assignment Given the Tree Model: Develop a Standardized Classification Scheme

The two basic functions of biological taxonomy are to (i) provide a universal system for information storage and retrieval, and (ii) encapsulate an evolutionary interpretation of biological diversity (Mayr, 1982). Unfortunately, current biological classifications are grossly nonstandardized because: (i) the species in named taxa are typically united by some unspecified mix of similarity by resemblance and similarity by descent, and (ii) even when the nested taxonomic ranks in a Linnaean hierarchy do register bona-fide nested clades the rankings remain noncomparable across different kinds of organisms (because no serious attempt has ever been made to normalize assayed characters, equilibrate taxonomic assignments, or even adopt any standardized criteria for taxonomic ranking). For example, some taxonomic genera such as Drosophila are an order of magnitude older than others such as Gorilla or Pan, and, because of an apples-versus-oranges problem, a taxonomic rank (such as a genus) shared by fruit flies and primates implies nothing about whether such taxa are similar with respect to genetic, phenotypic, or any other aspect of evolutionary diversity. As noted by de Queiroz and Gauthier (1992), “No scientific enterprise, least of all one that considers the promotion of nomenclatural universality as one of its primary objectives, can accept the inconsistencies and ambiguities current in biological taxonomy.” Or as phrased by Hennig (1966), “If systematics is to be a science it must bow to the self-evident requirement that objects to which the same label is given must be comparable in some way.”

This state of affairs could, in principle, be rectified if systematists were to adopt absolute geological time as the universal evolutionary yardstick against which to standardize taxonomic assignments for extant clades of known age. The basic idea, proposed by Hennig (1966) and elaborated by Avise and Johns (1999), is that extant species that separated from a common ancestor in a specified window of evolutionary time would be assigned a taxonomic rank defined by that temporal band. The boundaries of the temporal windows are arbitrary at the outset and must be ratified by convention, but a proposal that I favor in principle would link each taxonomic rank to a specific geological episode. Serendipitously, there are 17 supraspecific ranks in modern versions of the Linnaean hierarchy (Mayr and Ashlock, 1991) and also 17 primary subdivisions in the traditional geological timescale (Futuyma, 1998), thus affording the possibility of a perfect one-to-one allocation of taxonomic rank to geological episode (Fig. 15.2).

If the field of systematics from its outset had been able to implement a temporal-banding strategy for erecting biological classifications, many of the inconsistencies and ambiguities in current taxonomies could have

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Front Matter (R1-R18)
Part I: Contemporary Patterns and Processes in Animals (1-4)
1 Ecological Extinction and Evolution in the Brave New Ocean--JEREMY B. C. JACKSON (5-26)
2 Are We in the Midst of the Sixth Mass Extinction? A View from the World of Amphibians--DAVID B. WAKE and VANCE T. VREDENBURG (27-44)
3 Patterns of Biodiversity and Endemism on Indo-West Pacific Coral Reefs--MARJORIE L. REAKA, PAULA J. RODGERS, and ALEXEI U. KUDLA (45-62)
4 Homage to Linnaeus: How Many Parasites? How Many Hosts?--ANDY DOBSON, KEVIN D. LAFFERTY, ARMAND M. KURIS, RYAN F. HECHINGER, and WALTER JETZ (63-82)
Part II: Contemporary Patterns and Processes in Plants and Microbes (83-84)
5 Species Invasions and Extinction: The Future of Native Biodiversity on Islands--DOV F. SAX and STEVEN D. GAINES (85-106)
6 How Many Tree Species Are There in the Amazon and How Many of Them Will Go Extinct?--STEPHEN P. HUBBELL, FANGLIANG HE, RICHARD CONDIT, LUIS BORDA-DE-ÁGUA, JAMES KELLNER, and HANS TER STEEGE (107-126)
7 Microbes on Mountainsides: Contrasting Elevational Patterns of Bacterial and Plant Diversity--JESSICA A. BRYANT, CHRISTINE LAMANNA, HÉLÈNE MORLON, ANDREW J. KERKHOFF, BRIAN J. ENQUIST, and JESSICA L. GREEN (127-148)
8 Resistance, Resilience, and Redundancy in Microbial Communities--STEVEN D. ALLISON and JENNIFER B. H. MARTINY (149-166)
Part III: Trends and Processes in the Paleontological Past (167-170)
9 Extinction as the Loss of Evolutionary History--DOUGLAS H. ERWIN (171-188)
10 Extinction and the Spatial Dynamics of Biodiversity--DAVID JABLONSKI (189-206)
11 Dynamics of Origination and Extinction in the Marine Fossil Record--JOHN ALROY (207-226)
12 Megafauna Biomass Tradeoff as a Driver of Quaternary and Future Extinctions--ANTHONY D. BARNOSKY (227-242)
Part IV: Prospects for the Future (243-246)
13 A Phylogenetic Perspective on the Distribution of Plant Diversity--MICHAEL J. DONOGHUE (247-262)
14 Phylogenetic Trees and the Future of Mammalian Biodiversity--T. JONATHAN DAVIES, SUSANNE A. FRITZ, RICHARD GRENYER, C. DAVID L. ORME, JON BIELBY, OLAF R. P. BININDA-EMONDS, MARCEL CARDILLO, KATE E. JONES, JOHN L. GITTLEMAN, GEORGINA M. MACE, and ANDY PURVIS (263-280)
15 Three Ambitious (and Rather Unorthodox) Assignments for the Field of Biodiversity Genetics--JOHN C. AVISE (281-296)
16 Engaging the Public in Biodiversity Issues--MICHAEL J. NOVACEK (297-316)
17 Further Engaging the Public on Biodiversity Issues--PETER J. BRYANT (317-328)
18 Where Does Biodiversity Go from Here? A Grim Business-as-Usual Forecast and a Hopeful Portfolio of Partial Solutions--PAUL R. EHRLICH and ROBERT M. PRINGLE (329-346)
References (347-394)
Index (395-414)