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In the Light of Evolution III: Two Centuries of Darwin (2009)
National Academy of Sciences (NAS)

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. "5 From Wild Animals to Domestic Pets, an Evolutionary View of Domestication--Carlos A. Driscoll, David W. Macdonald, and Stephen J. O'Brien." In the Light of Evolution III: Two Centuries of Darwin. Washington, DC: The National Academies Press, 2009.

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In the Light of Evolution Volume III: Two Centuries of Darwin
FIGURE 5.2 Distribution of F. silvestris microsatellite and mitochondrial geno-types with associated dendrograms. (A) Textured regions on map reflect the distribution of different STR genotype clades (see key at top). The mtDNA haplotype frequencies are indicated in pie charts specifying the number of specimens carrying each mtDNA haplotype clade. Domestic cats, F. silvestris catus, are distributed worldwide and overwhelmingly carry mtDNA clade IV mtDNA haplotypes. (B) Minimum evolution/neighbor-joining phylogram of 2,604 bp of the ND5 and ND6 gene of 176 mitochondrial haplotypes discerned from 742 specimens sampled across the range of the wildcat (from Europe, Asia, and Africa), Chinese mountain cat, domestic cat, and sand cat. Genetic distance estimators [see Driscoll et al. (2007) for details] provided concordant topologies that specified 6 clusters corresponding to the following subspecies designations: (1) F. silvestris silvestris wildcats from Europe ( mtDNA Clade I); (2) F. silvestris cafra wildcats from Southern Africa (mtDNA Clade II); (3) F. silvestris ornata wildcats from central Asia east of the Caspian Sea (mtDNA Clade III); (4) F. silvestris lybica wildcats from the Near East (mtDNA Clade IV); (5) F. silvestris bieti, Chinese mountain cats (mtDNA Clade V); and (6) F. margarita, sand cat (mtDNA Clade VI). The Chinese mountain cat is here referred to as a wildcat subspecies, F. silvestris bieti, as supported by data presented in Driscoll et al. (2007). The coalescence-based age of mtDNA ancestral nodes for all F. silvestris mtDNA lineages was estimated with the linearized tree method (Takezaki et al., 1995). The estimated age for the ancestor of F. silvestris lybica and domestic cats (mtDNA clade IV) is 131,000 years. Other methods of date estimation suggested a range from 107,000 to 155,000 years (Driscoll et al., 2007). These estimates are all greater by an order of magnitude than archaeological evidence for cat domestication (Vigne et al., 2004). The persistence within mtDNA clade IV of 5 well-supported mtDNA matrilines (A–E) dating back a hundred thousand years before any archaeological record of domestication indicates that domestic cats originated from at least 5 wildcat mtDNA haplotypes. (C) A phenogram [based on short tandem repeat (STR) data] for 851 domestic and wild specimens of Felis silvestris. Clade designations as in B.

FIGURE 5.2 Distribution of F. silvestris microsatellite and mitochondrial geno-types with associated dendrograms. (A) Textured regions on map reflect the distribution of different STR genotype clades (see key at top). The mtDNA haplotype frequencies are indicated in pie charts specifying the number of specimens carrying each mtDNA haplotype clade. Domestic cats, F. silvestris catus, are distributed worldwide and overwhelmingly carry mtDNA clade IV mtDNA haplotypes. (B) Minimum evolution/neighbor-joining phylogram of 2,604 bp of the ND5 and ND6 gene of 176 mitochondrial haplotypes discerned from 742 specimens sampled across the range of the wildcat (from Europe, Asia, and Africa), Chinese mountain cat, domestic cat, and sand cat. Genetic distance estimators [see Driscoll et al. (2007) for details] provided concordant topologies that specified 6 clusters corresponding to the following subspecies designations: (1) F. silvestris silvestris wildcats from Europe ( mtDNA Clade I); (2) F. silvestris cafra wildcats from Southern Africa (mtDNA Clade II); (3) F. silvestris ornata wildcats from central Asia east of the Caspian Sea (mtDNA Clade III); (4) F. silvestris lybica wildcats from the Near East (mtDNA Clade IV); (5) F. silvestris bieti, Chinese mountain cats (mtDNA Clade V); and (6) F. margarita, sand cat (mtDNA Clade VI). The Chinese mountain cat is here referred to as a wildcat subspecies, F. silvestris bieti, as supported by data presented in Driscoll et al. (2007). The coalescence-based age of mtDNA ancestral nodes for all F. silvestris mtDNA lineages was estimated with the linearized tree method (Takezaki et al., 1995). The estimated age for the ancestor of F. silvestris lybica and domestic cats (mtDNA clade IV) is 131,000 years. Other methods of date estimation suggested a range from 107,000 to 155,000 years (Driscoll et al., 2007). These estimates are all greater by an order of magnitude than archaeological evidence for cat domestication (Vigne et al., 2004). The persistence within mtDNA clade IV of 5 well-supported mtDNA matrilines (A–E) dating back a hundred thousand years before any archaeological record of domestication indicates that domestic cats originated from at least 5 wildcat mtDNA haplotypes. (C) A phenogram [based on short tandem repeat (STR) data] for 851 domestic and wild specimens of Felis silvestris. Clade designations as in B.

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Front Matter (R1-R16)
Part I: NATURAL SELECTION, OR ADAPTATION TO NATURE (1-4)
1 Natural Selection inAction During Speciation--Sara Via (5-26)
2 Adaptive Radiations:From Field to Genomic Studies--Scott A. Hodges and Nathan J. Derieg (27-46)
3 Genetics and Ecological Speciation--Dolph Schluter and Gina L. Conte (47-64)
4 Cascades of Convergent Evolution: The Corresponding Evolutionary Histories of Euglenozoans and Dinoflagellates--Julius Lukeš, Brian S. Leander, and Patrick J. Keeling (65-84)
Part II: ARTIFICIAL SELECTION, OR ADAPTATION TO HUMAN DEMANDS (85-88)
5 From Wild Animals to Domestic Pets, an Evolutionary View of Domestication--Carlos A. Driscoll, David W. Macdonald, and Stephen J. O'Brien (89-110)
6 Tracking Footprints of Maize Domestication and Evidence for a Massive Selective Sweep on Chromosome 10--Feng Tian, Natalie M. Stevens, and Edward S. Buckler IV (111-128)
7 Human-Induced Evolution Caused by Unnatural Selection Through Harvest of Wild Animals--Fred W. Allendorf and Jeffrey J. Hard (129-148)
8 In the Light of Directed Evolution: Pathways of Adaptive Protein Evolution--Jesse D. Bloom and Frances H. Arnold (149-164)
Part III: SEXUAL SELECTION, OR ADAPTATION TO MATING DEMANDS (165-168)
9 Mate Choice and Sexual Selection: What Have We Learned Since Darwin?--Adam G. Jones and Nicholas L. Ratterman (169-190)
10 Sexual Selection and Mating Systems--Stephen M. Shuster (191-212)
11 Reproductive Decisions Under Ecological Constraints: It's About Time--Patricia Adair Gowaty and Stephen P. Hubbell (213-242)
12 Postcopulatory Sexual Selection: Darwin's Omission and Its Consequences--William G. Eberhard (243-262)
Part IV: THE DARWINIAN LEGACY, 150 YEARS LATER (263-266)
13 Darwin and the Scientific Method--Francisco J. Ayala (267-286)
14 The Darwinian Revolution: Rethinking Its Meaningand Significance--Michael Ruse (287-306)
15 Did Darwin Write *the Origin* Backwards?--Elliott Sober (307-328)
16 Darwin's Place in the History of Thought: A Reevaluation--Robert J. Richards (329-342)
17 Darwin's "Strange Inversion of Reasoning"--Daniel Dennett (343-354)
References (355-398)
Index (399-414)