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In the Light of Evolution III: Two Centuries of Darwin (2009)
National Academy of Sciences (NAS)

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. "2 Adaptive Radiations:From Field to Genomic Studies--Scott A. Hodges and Nathan J. Derieg." In the Light of Evolution III: Two Centuries of Darwin. Washington, DC: The National Academies Press, 2009.

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In the Light of Evolution Volume III: Two Centuries of Darwin
FIGURE 2.2 Phylogeny of the North American species of Aquilegia [see Whittall and Hodges (2007)]. Shading at the branch tips indicates flower color: black indicates blue; gray indicates red; and open indicates white or yellow. Taxa may be fixed for a flower color (whole circles at branch tips) or polymorphic (half circles at branch tips). Shading (as above) at nodes indicates the most parsimonious reconstruction of color, with the likelihood of producing anthocyanins indicated by shaded pie diagrams. To the right of taxon names are 3 boxes indicating, from left to right, the absence (open symbols) or production of delphinidins (black filled), cyanidins (hatched), and pelargonidins (gray) based on Taylor (1984). Arrows indicate down-regulation of genes late in the core anthocyanin pathway in flowers of that species compared with the regulation in the anthocyanin-producing species A. formosa, A canadensis, and A. coerulea (Whittall et al., 2006b). Lines on the right indicate species that form natural hybrids.

FIGURE 2.2 Phylogeny of the North American species of Aquilegia [see Whittall and Hodges (2007)]. Shading at the branch tips indicates flower color: black indicates blue; gray indicates red; and open indicates white or yellow. Taxa may be fixed for a flower color (whole circles at branch tips) or polymorphic (half circles at branch tips). Shading (as above) at nodes indicates the most parsimonious reconstruction of color, with the likelihood of producing anthocyanins indicated by shaded pie diagrams. To the right of taxon names are 3 boxes indicating, from left to right, the absence (open symbols) or production of delphinidins (black filled), cyanidins (hatched), and pelargonidins (gray) based on Taylor (1984). Arrows indicate down-regulation of genes late in the core anthocyanin pathway in flowers of that species compared with the regulation in the anthocyanin-producing species A. formosa, A canadensis, and A. coerulea (Whittall et al., 2006b). Lines on the right indicate species that form natural hybrids.

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Front Matter (R1-R16)
Part I: NATURAL SELECTION, OR ADAPTATION TO NATURE (1-4)
1 Natural Selection inAction During Speciation--Sara Via (5-26)
2 Adaptive Radiations:From Field to Genomic Studies--Scott A. Hodges and Nathan J. Derieg (27-46)
3 Genetics and Ecological Speciation--Dolph Schluter and Gina L. Conte (47-64)
4 Cascades of Convergent Evolution: The Corresponding Evolutionary Histories of Euglenozoans and Dinoflagellates--Julius Lukeš, Brian S. Leander, and Patrick J. Keeling (65-84)
Part II: ARTIFICIAL SELECTION, OR ADAPTATION TO HUMAN DEMANDS (85-88)
5 From Wild Animals to Domestic Pets, an Evolutionary View of Domestication--Carlos A. Driscoll, David W. Macdonald, and Stephen J. O'Brien (89-110)
6 Tracking Footprints of Maize Domestication and Evidence for a Massive Selective Sweep on Chromosome 10--Feng Tian, Natalie M. Stevens, and Edward S. Buckler IV (111-128)
7 Human-Induced Evolution Caused by Unnatural Selection Through Harvest of Wild Animals--Fred W. Allendorf and Jeffrey J. Hard (129-148)
8 In the Light of Directed Evolution: Pathways of Adaptive Protein Evolution--Jesse D. Bloom and Frances H. Arnold (149-164)
Part III: SEXUAL SELECTION, OR ADAPTATION TO MATING DEMANDS (165-168)
9 Mate Choice and Sexual Selection: What Have We Learned Since Darwin?--Adam G. Jones and Nicholas L. Ratterman (169-190)
10 Sexual Selection and Mating Systems--Stephen M. Shuster (191-212)
11 Reproductive Decisions Under Ecological Constraints: It's About Time--Patricia Adair Gowaty and Stephen P. Hubbell (213-242)
12 Postcopulatory Sexual Selection: Darwin's Omission and Its Consequences--William G. Eberhard (243-262)
Part IV: THE DARWINIAN LEGACY, 150 YEARS LATER (263-266)
13 Darwin and the Scientific Method--Francisco J. Ayala (267-286)
14 The Darwinian Revolution: Rethinking Its Meaningand Significance--Michael Ruse (287-306)
15 Did Darwin Write *the Origin* Backwards?--Elliott Sober (307-328)
16 Darwin's Place in the History of Thought: A Reevaluation--Robert J. Richards (329-342)
17 Darwin's "Strange Inversion of Reasoning"--Daniel Dennett (343-354)
References (355-398)
Index (399-414)