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NAKFI Synthetic Biology: Building a Nation's Inspiration: Interdisciplinary Research Team Summaries (2010)

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. "IDR Team Summary 7: How do we move beyond genetics to engage chemical and physical approaches to synthetic biology?." NAKFI Synthetic Biology: Building a Nation's Inspiration: Interdisciplinary Research Team Summaries. Washington, DC: The National Academies Press, 2010.

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Synthetic Biology Building on Nature's Inspiration: Interdisciplinary Research Team Summaries

for control of biological function. Such tools will become increasingly important as synthetic biology embraces more fully the design of complex multicellular systems.

Key Questions

  • What are the most promising approaches to chemical and physical control of biological function? Inhibition or re-wiring of cellular pathways? Introduction of light-sensitive or mechanically-sensitive components? Others?

  • Which cellular pathways are most promising with respect to control by chemical and physical means?

  • What advantages might accrue from the development of novel chemical substrates (e.g., “abiological” nucleotides, amino acids, sugars, and other biosynthetic intermediates) for use in synthetic biology?

  • Can we create organisms that prefer or even require altered sets of molecular substrates? If so, what kinds of biological behavior might emerge from such adaptations?

  • To what extent can we change the properties of biological macromolecules? Will such changes allow us to overcome some of the most important limitations of macromolecular therapeutics or industrial enzymes (e.g., sensitivity to proteases, surfactants, or dehydration)?

  • How can control of spatial relationships among cells contribute to the engineering of novel biological function?

  • Are there advances in bioreactor design and micro- and nano-fluidic technologies that should be brought to bear on problems in synthetic biology?

Reading

Ismagilov RF and Maharbiz MM. Can we build synthetic, multicellular systems by controlling developmental signaling in space and time? Curr Opin Chem Biol 2007;11:604: http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRX-4R5G8H6-1&_user=4422&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_searchStrId=968299332&_rerunOrigin=google&_acct=C000059600&_version=1&_urlVersion=0&_userid=4422&md5=19d13726d6c3f69e1412a28950ae0340. Accessed online 28 July 2009.

Justman QA, Serber Z, Ferrel Jr. JE, El-Samad H, Shokat KM. Tuning the activation threshold of a kinase network by nested feedback loops. Science 2009;324:509: http://www.sciencemag.org/cgi/content/full/324/5926/509. Accessed online 28 July 2009.

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Front Matter (R1-R14)
Conference Summary (1-6)
IDR Team Summary 1: What new foundational technologies and tools are required to make biology easier to engineer? (7-18)
IDR Team Summary 2: What are the significant differences, if any, between risk assessment capacity and religious analyses of the moral permissibility for synthetic biology applications and other biotechnology applications? (19-24)
IDR Team Summary 3: Reconstructing gene circuitry: How can synthetic biology lead us to an understanding of the principles underlying natural genetic circuits and to the discovery of new biology? (25-36)
IDR Team Summary 4: Designing communities of cells: how do we create communication and collaboration between cells to allow for specialization and division of labor? (37-44)
IDR Team Summary 5: Why are human-designed biological circuits and devices fragile and inaccurate relative to their natural counterparts? (45-52)
IDR Team Summary 6: How can genomics be leveraged to develop coherent approaches for rapidly exploring the biochemical diversity in and engineering of non-model organisms? (53-60)
IDR Team Summary 7: How do we move beyond genetics to engage chemical and physical approaches to synthetic biology? (61-70)
IDR Team Summary 8: What is the role of evolution and evolvability in synthetic biology? (71-76)
IDR Team Summary 9: How do we maximally capitalize on the promise of synthetic biology? (77-82)
Appendixes (83-84)
List of Synthetic Biology Podcast Tutorials (85-88)
Agenda (89-94)
Participants (95-106)