Palenchar, J. B. and Bellofatto, V. (2006). Gene transcription in trypanosomes. Molecular and Biochemical Parasitology 146, 135–141.

Paterou, A., Walrad, P., Craddy, P., Fenn, K. and Matthews, K. (2006). Identification and stage-specific association with the translational apparatus of TbZFP3, a ccch protein that promotes trypanosome life cycle development. Journal of Biological Chemistry 281, 39002–39013.

Queiroz, R., Benz, C., Fellenberg, K., Hoheisel, J. and Clayton, C. (2009). Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons. BMC Genomics 10, 495.

Resendis-Antonio, O. (2009). Filling kinetic gaps: dynamic modeling of metabolism where detailed kinetic information is lacking. PLoS One 4, e4967.

Richard, P., Teusink, B., Hemker, M. B., van Dam, K. and Westerhoff, H. V. (1996). Sustained oscillations in free-energy state and hexose phosphates in yeast. Yeast 12, 731–740.

Rokka, A., Antonenkov, V. D., Soininen, R., Immonen, H. L., Pirilä, P. L., Bergmann, U., Sormunen, R. T., Weckström, M., Benz, R. and Hiltunen, J. K. (2009). Pxmp2 is a channel-forming protein in Mammalian peroxisomal membrane. PLoS One 4, e5090.

Schmitz, J. P., Van Riel, N. A., Nicolay, K., Hilbers, P. A. and Jeneson, J. A. (2009). Silencing of glycolysis in muscle: experimental observation and numerical analysis. Experimental Physiology 95, 380–397.

Schuster, R. and Holzhütter, H. G. (1995). Use of mathematical models for predicting the metabolic effect of large-scale enzyme activity alterations. Application to enzyme deficiencies of red blood cells. European Journal of Biochemistry 229, 403–418.

Siegel, T., Hekstra, D., Kemp, L., Figueiredo, L., Lowell, J., Fenyo, D., Wang, X., Dewell, S. and Cross, G. (2009). Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei. Genes & Development 23, 1063–1076.

Smallbone, K., Simeonidis, E., Broomhead, D. S. and Kell, D. B. (2007). Something from nothing: bridging the gap between constraint-based and kinetic modelling. FEBS Journal 274, 5576–5585.

Snoep, J. L., Bruggeman, F., Olivier, B. G. and Westerhoff, H. V. (2006). Towards building the silicon cell: a modular approach. Biosystems 83, 207–216.

Stern, M., Gupta, S., Salmon-Divon, M., Haham, T., Barda, O., Levi, S., Wachtel, C., Nilsen, T. and Michaeli, S. (2009). Multiple roles for polypyrimidine tract binding (PTB) proteins in trypanosome RNA metabolism. RNA 15, 648–665.

Teusink, B., Walsh, M. C., Van Dam, K. and Westerhoff, H. V. (1998). The danger of metabolic pathways with turbo design. Trends in Biochemical Sciences 23, 162–169.

Walrad, P., Paterou, A., Acosta-Serrano, A. and Matthews, K. R. (2009). Differential trypanosome surface coat regulation by a CCCH protein that co-associates with procyclin mRNA cis-elements. PLoS Pathogens 5, e1000317.

Westerhoff, H. V., Kolodkin, A., Conradie, R., Wilkinson, S. J., Bruggeman, F. J., Krab, K., Van Schuppen, J. H., Hardin, H., Bakker, B. M., Moné, M. J., Rybakova, K. N., Eijken, M., Van Leeuwen, H. J. and Snoep, J. L. (2009). Sytems biology towards life in silico: mathematics of the control of living cells. Journal of Mathematical Biology 58, 7–34.

Westerhoff, H. V., Koster, J. G., Van Workum, M. and Rudd, K. E. (1990). On the control of gene expression. In Control of Metabolic Processes (ed. Cornish-Bowden, A. and Cardenas, M.-L.), pp. 399–412. Plenum Press, New York.

Xiao, Y., McCloskey, D. E. and Phillips, M. A. (2009). RNA interference-mediated silencing of ornithine decarboxylase and spermidine synthase genes in Trypanosoma brucei provides insight into regulation of polyamine biosynthesis. Eukaryotic Cell 8, 747–755.



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