Ioannidis, J. P., and O. A. Panagiotou. 2011. Comparison of effect sizes associated with biomarkers reported in highly cited individual articles and in subsequent meta-analyses. Journal of the American Medical Association 305(21):2200-2210.
Kodama, K., M. Horikoshi, K. Toda, S. Yamada, K. Hara, J. Irie, M. Sirota, A. A. Morgan, R. Chen, H. Ohtsu, S. Maeda, T. Kadowaki, and A. J. Butte. 2012. Expression-based genome-wide association study links the receptor CD44 in adipose tissue with type 2 diabetes. Proceedings of the National Academy of Sciences 109(18):7049-7054.
Lam, H. Y., M. J. Clark, R. Chen, R. Chen, G. Natsoulis, M. O’Huallachain, F. E. Dewey, L. Habegger, E. A. Ashley, M. B. Gerstein, A. J. Butte, H. P. Ji, and M. Snyder. 2011. Performance comparison of whole-genome sequencing platforms. Nature Biotechnology 30(1):78-82.
Mullard, A. 2011. Reliability of “new drug target” claims called into question. Nature Reviews Drug Discovery 10(9):643-644.
NSF (National Science Foundation). 2012. Advanced computing infrastructure: Vision and strategic plan. NSF Document nsf12051. http://www.nsf.gov/pubs/2012/nsf12051/nsf12051.pdf (accessed April 27, 2012).
Patti, M. E., A. J. Butte, S. Crunkhorn, K. Cusi, R. Berria, S. Kashyap, Y. Miyazaki, I. Kohane, M. Costello, R. Saccone, E. J. Landaker, A. B. Goldfine, E. Mun, R. DeFronzo, J. Finlayson, C. R. Kahn, and L. J. Mandarino. 2003. Coordinated reduction of genes of oxidative metabolism in humans with insulin resistance and diabetes: Potential role of PGC1 and NRF1. Proceedings of the National Academy of Sciences 100(14):8466-8471.
Schnoes, A. M., S. D. Brown, I. Dodevski, and P. C. Babbitt. 2009. Annotation error in public databases: Misannotation of molecular function in enzyme superfamilies. PLoS Computational Biology 5(12):e1000605.
Sirota, M., J. T. Dudley, J. Kim, A. P. Chiang, A. A. Morgan, A. Sweet-Cordero, J. Sage, and A. J. Butte. 2011. Discovery and preclinical validation of drug indications using compendia of public gene expression data. Science Translational Medicine 3(96):96ra77.
Stein, L. D. 2010. The case for cloud computing in genome informatics. Genome Biology 11(5):207.