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REFERENCES
Allen, L.G., A.M. Findlay, and C.M. Phalen. 2002. Structure and standing stock of the fish assemblages of
San Diego Bay, California from 1994 to 1999. Bulletin of the Southern California Academy of
Sciences 102(2).
Allen, L.G., M.M. Yoklavich, G.M. Cailliet, and M.H. Horn. 2006. Bays and Estuaries in Ecology of Marine
Fishes: California and Adjacent Waters. Allen, L.G., D.J. Pondella, and M.H. Horn (eds.),
University of California Press, Berkeley, CA.
Atkins Peer Review. 2012. Final Report on Peer Review of the Science Used in the National Park
Service's Draft Environmental Impact Statement Drakes Bay Oyster Company Special Use
Permit. Atkins Project No.: 100025958. March 2012. 96 pp.
Beck, M.W., K.L. Heck Jr., K.W. Able, D.L. Childers, D.B. Eggleston, B.M. Gillanders, B. Halpern, C.G.
Hays, K.Hoshino, T.J. Minello, R.J. Orth, P.F. Sheridan, and M.P. Weinstein. 2001. The
identification, conservation and management of estuarine and marine nurseries for fish and
invertebrates. Bioscience 51(8):633-641.
Becker, B.H., D.T. Press, and S.G. Allen. 2009. Modeling the effects of El Niño, density dependence, and
disturbance on harbor seal (Phoca Vitulina) counts in Drakes Estero, California: 19972007.
Marine Mammal Science 25(1):1-18.
Becker, B.H., D.T. Press, and S.G. Allen. 2011. Evidence for long-term spatial displacement of breeding
and pupping harbour seals by shellfish aquaculture over three decades. Aquatic Conservation:
Marine and Freshwater Ecosystems 21: 247-260.
Bejder, L., A. Samuels, H. Whitehead, H. Finn, and S. Allen. 2009. Impact assessment research: Use and
misuse of habituation, sensitisation and tolerance in describing wildlife responses to
anthropogenic stimuli. Marine Ecology Progress Series 395:177-185.
Benfield, J.A., P.A. Bell, L.J. Troup, and N.C. Soderstorm. 2010. Aesthetic and affective effects of vocal
and traffic noise on natural landscape assessment. Journal of Environmental Psychology 30:103-
111.
Boese, B.L., J.E. Kaldy, P.J. Clinton, P.M. Eldridge, and C.L. Folger. 2009. Recolonization of intertidal
Zostera marina L. (eelgrass) following experimental shoot removal. Journal of Experimental
Marine Biology and Ecology 374(1):69-77.
Bond, M.H. 2006. Importance of estuarine rearing to central California steelhead (Oncorhynchus mykiss)
growth and marine survival. M.S. thesis, University of California-Santa Cruz, Santa Cruz, CA. 59
pp.
Booth, D.M. and K.L. Heck Jr. 2009. Effects of the American oyster Crassostrea virginica on growth rates
of the seagrass Halodule wrightii. Marine Ecology Progress Series 389:117-126.
Boström, C., E.L. Jackson, and C.A. Simenstad. 2006. Seagrass landscapes and their effects on
associated fauna: A review. Estuarine and Coastal Shelf Science 68:383-403.
53
OCR for page 54
54 Scientific Review of the DEIS DBOC SUP
Boström, C., S.J. Pittman, C. Simenstad, and R.T. Kneib. 2011. Seascape ecology of coastal biogenic
habitats: Advances, gaps, and challenges. Marine Ecology Progress Series 427:191-217.
Bouchet, V.M.P. and P-G. Sauriau. 2008. Influence of oyster culture practices and environmental
conditions on the ecological status of intertidal mudflats in the Pertuis Charentais (SW France): A
multi-index approach. Marine Pollution Bulletin 56:1898-1912.
Bourne, N. 1982. Distribution, reproduction, and growth of Manila clam, Tapes philippinarum (Adams and
Reeve), in British Columbia. Journal of Shellfish Research 2:47-54.
Bricker, S., B. Longstaff, W. Dennison, A. Jones, K. Boicourt, C. Wicks, and J. Woerner. 2007. Effects of
Nutrient Enrichment In the Nation's Estuaries: A Decade of Change. NOAA Coastal Ocean
Program Decision Analysis Series No. 26. National Centers for Coastal Ocean Science, Silver
Spring, MD. 328 pp.
Buck, C., F. Wilkerson, A. Parker, and J. Largier. 2011. The influence of coastal nutrients on
phytoplankton blooms in a low-inflow estuary [abstract]. 58th Eastern Pacific Ocean Conference.
Buck, C., F. Wilkerson, J. Largier, and A. Parker. 2012. The influence of seasonal nutrient supply on
phytoplankton blooms in a low inflow estuary [abstract]. American Society of Limonology and
Oceanography. Salt Lake City, Utah.
Bulleri, F. and M.G. Chapman. 2010. The introduction of coastal infrastructure as a driver of change in
marine environments. Journal of Applied Ecology 47(1):26-35.
Cahoon, D.R., D.J. Reed, and J.W. Day, Jr. 1995. Estimating shallow subsidence in microtidal salt
marshes of the southeastern United States: Kaye and Barghoorn revisited. Marine Geology
128:1-9.
Carman, M.R., K.E. Hoagland, E. Green-Beach, and D.W. Grunden. 2009. Tunicate faunas of two North
Atlantic-New England Islands: Martha's Vineyard, Massachusetts, and Block Island, Rhode
Island. Aquatic Invasions 4(1):65-70.
Carman, M.R., J.A. Morris, R.C. Karney, and D.W. Grunden. 2010. An initial assessment of native and
invasive tunicates in shellfish aquaculture of the North American east coast. Journal of Applied
Ichthyology, Special Issue: Alien Species in Aquaculture and Fisheries 26(s2):8-11.
Carroll, J., C.J. Gobler, and B.J. Peterson. 2008. Resource-restricted growth of eelgrass in New York
estuaries: Light limitation, and alleviation of nutrient stress by hard clams. Marine Ecology
Progress Series 369:51-62.
Crawford, C. 2003. Environmental management of marine aquaculture in Tasmania, Australia.
Aquaculture 226:129-138.
Cruz Sueiro, M., A. Bortolus, and E. Schwindt. 2011. Habitat complexity and community composition:
Relationships between ecosystem engineers and the associated macroinvertebrate
assemblages. Helgoland Marine Research 65:467-477.
Dang, C., X. de Montaudouin, M. Gam, C. Paroissin, N. Bru, and N. Caill-Milly. 2010. The Manila clam
population in Arcachon Bay (SW France): Can it be kept sustainable? Journal of Sea Research
63:108-118.
OCR for page 55
References 55
Diederich, S. 2006. High survival and growth rates of introduced Pacific oysters may cause restrictions on
habitat use by native mussels in the Wadden Sea. Journal of Experimental Marine Biology and
Ecology 328:211-227.
Doney, S.C., M. Ruckelshaus, J.E. Duffy, J.P. Barry, F. Chan, C.A. English, H.M. Galindo, J.M.
Grebmeier, A.B. Hollowed, N. Knowlton, J. Polovina, N.N. Rabalais, W.J. Sydeman, and L.D.
Talley. 2012. Climate Change Impacts on Marine Ecosystems. Annual Review of Marine Science
4:11-37.
Everett, R.A., Ruiz, G.M., and J.T. Carlton. 1995. Effect of oyster mariculture on submerged aquatic
vegetation- an experimental test in a pacific-northwest estuary. Marine Ecology Progress Series
125(1-3):205-217.
Ferraro, S.P. and F.A. Cole. 2011. Ecological periodic tables for benthic macrofaunal usage of estuarine
habitats in the US Pacific Northwest. Estuarine, Coastal and Shelf Science 94(1):36-47.
Fidell, S., S. Teffeteller, R. Horonjeff, and D.M. Green. 1979. Predicting annoyance from detectability of
low-level sounds. Journal of the Acoustical Society of America 66:1427-1434.
Forrest, B.M. and R.G. Creese. 2006. Benthic impacts of intertidal oyster culture, with consideration of
taxonomic sufficiency. Environmental Monitoring and Assessment 112:159-176.
Forrest, B.M., N.B. Keeley, G.A. Hopkins, S.C. Webb, and D.M. Clement. 2009. Bivalve aquaculture in
estuaries: Review and synthesis of oyster cultivation effects. Aquaculture 298:1-15.
Fresh, K.L., W. Graeber, K.K. Bartz, J.R. Davies, M.D. Scheuerell, A.D. Haas, M.H. Ruckelshaus, and
B.L. Sanderson. 2009. Incorporating spatial structure and diversity into recovery planning for
anadromous pacific salmonids. in Knudsen, E.E. and J.H. Michael, Jr. (Eds.) Pacific Salmon
Environmental and Life History Models: Advancing Science for Sustainable Salmon in the Future.
American Fisheries Society, Bethesda, Maryland. Pp. 403-428.
Gerdes, D. 1983. The Pacific oyster Crassostrea gigas: Part II. Oxygen consumption of larvae and adults.
Aquaculture 31(2-4):221-231.
Grigg, E., D. Green, S. G. Allen, and H. Markowitz. 2002. Nocturnal and diurnal haul-out patterns of
harbor seals (Phoca vitulina richardsi) at Castro Rocks, San Francisco Bay, California. California
Fish and Game 88:15-27.
Grigg, E.K., S.G. Allen, D.E. Green, and H. Markowitz. 2004. Harbor seal, Phoca vitulina richardii,
population trends in the San Francisco Bay estuary, 1970-2002. California Fish and Game 90:51-
70.
Grigg, E.K., S.G. Allen, D.E. Craven-Green, A.P. Klimley, H. Markowitz, and D.L. Elliott-Fisk. 2012.
Foraging distribution of Pacific harbor seals (Phoca vitulina richardii) in a highly impacted estuary.
Journal of Mammalogy 93(1):282-293.
Grosholz, E. 2011. Estimating the Relative Abundances of Naturalized Manila Clams and Invasive
Fouling Species in Drakes Estero. Report to National Park Service, OP Fund #42498.
Hammerstrom, K.K., W.J. Kenworthy, P.E. Whitfield, and M.F. Merello. 2007. Response and recovery
dynamics of seagrasses Thalassia testudinum and Syringodium filiforme and macroalgae in
experimental motor vessel disturbances. Marine Ecology Progress Series 345:83-92.
OCR for page 56
56 Scientific Review of the DEIS DBOC SUP
Harbin-Ireland, A.C. 2004. Effects of Oyster Mariculture on the Benthic Invertebrate Community in Drakes
Estero. Pt. Reyes Peninsula, California. MS thesis, University of California, Davis.
Harris, P.M., A.D. Neff, S.W. Johnson, and J.F. Thedinga. 2008. Eelgrass habitat and faunal
assemblages in the City and Borough of Juneau, Alaska. NOAA Technical Memo. NMFSAFSC-
182. U.S. Department of Commerce, 46 pp.
Hatch, L.T. and K.M. Fristrup. 2009. No barrier at the boundaries: Implementing regional frameworks for
noise management in protected natural areas. Marine Ecology Progress Series 395:223-244.
Hoffman, D.J., B.A. Rattner, G.A. Burton, Jr., and J. Cairns, Jr. (Editors). 2003. Handbook of
Ecotoxicology. 2nd edition. CRC Press, Boca Raton, FL. 1290 pp.
Hosack, G.R., B.R. Dumbauld, J.L. Ruesink, and D.A. Armstrong. 2006. Habitat associations of estuarine
species: Comparisons of intertidal mudflat, seagrass (Zostera marina), and oyster (Crassostrea
gigas) habitats. Estuaries and Coasts 29(6):1150-1160.
Humphreys, J., R.W.G. Caldow, S. McGrorty, A.D. West, and A.C. Jensen. 2007. Population dynamics of
naturalised Manila clams Ruditapes philippinarum in British coastal waters. Marine Biology
151(6):2255-2270.
International Council for the Exploration of the Sea (ICES). 2005. ICES Code of Practice on the
Introductions and Transfers of Marine Organisms 2005. Appendix B. 30 pp. [Online]. Available at:
http://www.ices.dk/pubs/Miscellaneous/Codeofpractice.asp.
Jackson, E.L., A.A. Rowden, M.J. Attrill, S.J. Bossey, and M.B. Jones. 2001. The importance of seagrass
beds as a habitat for fishery species. Oceanography and Marine Biology--An Annual Review
39:269-303.
Jones and Stokes. 1992. Expert testimony on Yuba River fisheries issues by Jones & Stokes Associates'
aquatic and environmental specialists representing Yuba County Water Agency. January 20,
1992. Prepared for the California State Water Resources Control Board Water Rights Hearing on
Lower Yuba River, February 10, 11, and 13, 1992. Sacramento, CA.
Kaiser, M.J., K.R. Clarke, H. Hinz, M.C.V. Austen, P.J. Somerfield, and I. Karakassis. 2006. Global
analysis of response and recovery of benthic biota to fishing. Marine Ecology Progress Series
311:1-14.
Kaval, P. and J. Loomis. 2003. Updated Outdoor Recreation Use Values with Emphasis on National Park
Recreation. Report Prepared for Dr. Bruce Peacock, National Park Service, Fort Collins, CO
under Cooperative Agreement CA 1200-99-009, Project number IMDE-02-0070. 48 pp.
Kelly, J.P. J.G. Evens, R.W. Stallcup, and D. Wimpfheimer. 1996. Effects of oyster culture on habitat use
by wintering shorebirds in Tomales Bay, California. California Fish and Game 82(4):160-174.
Kenworthy W.J., M.S. Fonseca, P.E. Whitfield, and K.K. Hammerstrom. 2002. Analysis of seagrass
recovery in experimental excavations and propeller-scar disturbances in the Florida Keys
National Marine Sanctuary. Journal of Coastal Research 37:75-85.
King, N. 2004. Compilation of information on coho salmon and steelhead trout collected between 1994-
2003 in the Tomales Bay watershed with recommendations for future actions, and a list of
OCR for page 57
References 57
partners and selection criteria for future salmonid restoration projects. Tomales Bay Watershed
Council, Point Reyes Station, CA. 47 pp.
Kobayashi, M., E.E. Hofmann, E.N. Powell, J.M. Klinck, and K. Kusaka. 1997. A population dynamics
model for the Japanese oyster, Crassostrea gigas. Aquaculture 149:285-321.
Koch, E.W. 2002. Impact of Boat-Generated Waves on a Seagrass Habitat. Journal of Coastal Research
(Special Issue) 37:66-74.
Koch, E.W. and S. Beer. 1996. Tides, light and the distribution of Zostera marina in Long Island Sound,
USA. Aquatic Botany 53:97-107.
Koski, K.V. 2009. The fate of coho salmon nomads: The story of an estuarine-rearing strategy promoting
resilience. Ecology and Society 14(1):4. [Online]. Available at:
http://www.ecologyandsociety.org/vol14/iss1/art4/.
Lejart, M. and C. Hily. 2011. Differential response of benthic macrofauna to the formation of novel oyster
reefs (Crassostrea gigas, Thunberg) on soft and rocky substrate in the intertidal of the Bay of
Brest, France. Journal of Sea Research 65:84-93.
Lockwood, J.L., P. Cassey, T. Blackburn. 2005. The role of propagule pressure in explaining species
invasions. Trends In Ecology and Evolution 20(5):223-228.
Macreadie, P.I., J.S. Hindell, G.P. Jenkins, R.M. Connolly, and M.J. Keough. 2009. Fish responses to
experimental fragmentation of seagrass habitat. Conservation Biology 23:644-652.
Marine Mammal Commission (MMC). 2011. Mariculture and harbor seals in Drakes Estero, California. 22
November 2011. 70 pp.
Martin, J.A. 1995. Food habits of some estuarine fishes in a small, seasonal central California lagoon.
M.S. thesis, San Jose State University, San Jose, CA. 48 pp.
Miller, N.P. 2008. US national parks and management of park soundscapes: A review. Applied Acoustics
69:77-92.
Moore, K.A., R.L. Wetzel, and R.J. Orth. 1997. Seasonal pulses of turbidity and their relations to eelgrass
(Zostera marina L.) survival in an estuary. Journal of Experimental Marine Biology and Ecology
215:115-134.
Moore, E.C. and K.A. Hovel. 2010. Relative influence of habitat complexity and proximity to patch edges
on seagrass epifaunal communities. Oikos 119:1299-1311.
National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric Administration. 2005.
Designation of Critical Habitat for Seven Evolutionary Significant Units of Pacific Salmon and
Steelhead in California. Federal Register. 70(179):52488-52627.
National Oceanic and Atmospheric Administration (NOAA). 2011. NOAA's Estuarine Eutrophication
Survey, Volume 5: Pacific Coast Region. Silver Spring, MD: Office of Ocean Resources
Conservation and Assessment. [Online]. Available at:
http://ccma.nos.noaa.gov/stressors/pollution/eutrophication/eutrocards/drakes.pdf.
OCR for page 58
58 Scientific Review of the DEIS DBOC SUP
National Park Service (NPS). 2001. Director's Order 12: Conservation Planning, Environmental Impact
Analysis, and Decision-making. NPS Office of Policy.
National Park Service. 2007. Point Reyes National Seashore Drakes Estero: A Sheltered Wilderness
Estuary. Version III. Department of the Interior, Point Reyes National Seashore, California. May 8,
2007, 21p.
National Park Service, U.S. Department of the Interior (DEIS). 2011. Draft Environmental Impact
Statement: Drakes Bay Oyster Company Special Use Permit. September 2011. 74 pp. [Online].
Available at:
http://parkplanning.nps.gov/document.cfm?parkID=333&projectID=33043&documentID=43390.
National Research Council (NRC). 2003. Marine Mammal Populations and Ocean Noise: Determining
When Noise causes Biologically Significant Effects. National Academies Press, Washington, DC.
National Research Council. 2004. Nonnative Oysters in the Chesapeake Bay. National Academies Press,
Washington, DC.
National Research Council, 2007. Analysis of Global Change Assessments: Lessons Learned. National
Academies Press, Washington, DC.
National Research Council. 2009. Shellfish Mariculture in Drakes Estero, Point Reyes National Seashore,
California. National Academies Press, Washington, DC.
National Research Council. 2012. Sea-Level Rise for the Coasts of California, Oregon, and Washington:
Past, Present, and Future. National Academies Press, Washington, DC.
Needham, P.R. 1939. Quantitative and qualitative observations on fish foods in Waddell Creek Lagoon.
Transactions of the American Fisheries Society 69:178-186.
Newell, R.I.E. and E.W. Koch. 2004. Modeling seagrass density and distribution in response to changes
in turbidity stemming from bivalve filtration and seagrass sediment stabilization. Estuaries 27:
793-806.
Nightengale, B. and C.A. Simenstad. 2001. Overwater structures--marine issues. White Paper Research
Project T1803, Task 35. Washington State Transportation Center (TRAC), University of
Washington, Seattle, WA. 133 pp + append.
Noise Unlimited, Inc.1995. Boat Noise Tests Using Static and Full-Throttle Measurement Methods for the
New Jersey State Police.
Numaguchi, K. 1998. Preliminary experiments on the influence of water temperature, salinity and air
exposure on the mortality of Manila clam larvae. Aquaculture International 81:77-81.
Ono, K., C.A. Simenstad, J.D. Toft, S.L. Southard, K.L. Sobocinski, and A. Borde. 2010. Assessing and
mitigating dock shading impacts on the behavior of juvenile Pacific salmon (Oncorhynchus spp.):
Can artificial light mitigate the effects? Res. Report WA-RD 755.1, Washington State Department
of Transportation, Olympia, WA. 74 pp + append.
Onuf, C.P. and M.L. Quammen. 1983. Fishes in a California coastal lagoon: Effects of major storms on
distribution and abundance. Marine Ecology Progress Series 12:1-14.
OCR for page 59
References 59
Pacific Fishery Management Council (PFMC). 2003. Pacific Coast Salmon Plan: Fisheries Management
for Commercial and Recreational Salmon Fisheries off the Coast of Washington, Oregon, and
California, as Revised through Amendment 14. September.
Parker, I.M., D. Simberloff, W.M. Lonsdale, K. Goodell, M. Wonham, P.M. Kareiva, M.H. Williamson, B.
Von Holle, P.B. Moyle, J.E. Byers, and L. Goldwasser. 1999. Impact: Toward a Framework for
Understanding the Ecological Effects of Invaders. Biological Invasions 1(1):3-19.
Peterson, B.J. and K.L. Heck Jr. 1999. The potential for suspension feeding bivalves to increase
seagrass productivity. Journal of Experimental Marine Biology and Ecology 240(1):37-52.
Peterson, B.J. and K.L. Heck Jr. 2001a. Positive interactions between suspension-feeding bivalves and
seagrass--a facultative mutualism. Marine Ecology Progress Series 213: 143-155.
Peterson, B.J. and K.L. Heck Jr. 2001b. An experimental test of the mechanism by which suspension
feeding bivalves elevate seagrass productivity. Marine Ecology Progress Series 218:115-125.
Pijanowski, B.C., L.J. Villanueva-Rivera, S.L. Dumyahn, A. Farina, B.L. Krause, B.M. Napoletano, S.H.
Gage, and N. Pieretti. 2011. Soundscape Ecology: The Science of Sound in the Landscape.
BioScience 61(3):203-216.
Pilditch, C.A., J. Grant, and K.R. Bryan. 2001. Seston supply to sea scallops (Placopecten magellanicus)
in suspended culture. Canadian Journal of Fisheries and Aquatic Sciences 58:241-253.
Powell, A.N. and C.L. Collier. 2000. Habitat use and reproductive success of western snowy plovers at
new nesting areas created for California least terns. Journal of Wildlife Management 64:24-33.
Powell, E.N., E.E. Hoffman, J.M. Klinck, and S.M. Ray. 1992. Modeling oyster populations I. A
commentary on filtration rate. Is faster always better? Journal of Shellfish Research 11:387-398.
Raimbault, M. and D. Dubois. 2005. Urban soundscapes: Experiences and knowledge. Cities 22(5):339-
350.
Robart, M., and J.L. Largier. 2008. Tidal flushing of a low-inflow estuary during summer: Salt balance and
chlorophyll in Drake's Estero, California [abstract]. Bodega Marine Laboratory, University of
California Davis.
Roni, P., T. Bennett, R. Holland, G. Pess, K. Hanson, R. Moses, M. McHenry, W. Ehinger, and J. Walter.
2012. Factors affecting migration timing, growth, and survival of juvenile coho salmon in two
coastal Washington watersheds. Transactions of the American Fisheries Society 141(4):890-906.
Ruesink, J.L., J.P. Fitzpatrick, B.R. Dumbauld, S.D. Hacker, A.C. Trimble, E.L. Wagner, and L.M.
Wisehart. 2012. Life history and morphological shifts in an intertidal seagrass following multiple
disturbances. Journal of Experimental Marine Biology and Ecology 424-425:25-31.
Rumrill, S.S. and V.K. Poulton. 2004. Ecological role and potential impacts of molluscan shellfish culture
in the estuarine environment of Humboldt Bay, CA. Annual Report. Western Regional
Aquaculture Center. November 2004. 44 pp. [Online]. Available at:
www.humboldtbay.org/harbordistrict/documents/other/Shellfish%20Culture%20Impact.pdf.
Salamunovich, T.J. 1987. Fish food habits and their interrelationships in lower Redwood Creek, Humboldt
County, California. M.S. thesis, Humboldt State University, Arcata, CA.
OCR for page 60
60 Scientific Review of the DEIS DBOC SUP
Salo, E.O. 1991. Life history of chum salmon (Oncorhynchus keta) in Pacific Salmon Life Histories. Groot,
C. and L. Margolis (eds.). UBC Press, Vancouver, BC. Canada. Pp. 231-309.
Satterthwaite, W.H., S.A. Hayes, J.E. Merz, S.M. Sogard, D.M. Frechette, and M. Mangel. 2012. State-
dependent migration timing and use of multiple habitat types in anadromous salmonids.
Transactions of the American Fisheries Society 141(3):781-794.
Schafer, R.M. 1969. The New Soundscape. Vienna: Universal Edition.
Schaffelke, B., J. Mellors, and N.C. Duke. 2005. Water quality in the Great Barrier Reef region:
Responses of mangrove, seagrass and macroalgal communities. Marine Pollution Bulletin
51:279-296.
Schoener, A. and D.F. Tufts. 1987. Changes in oyster condition index with El Nino-southern oscillation
events at 46°N in an eastern pacific bay. Journal of Geophysical Research 92(C13):14429-
14435.
Schomer, P.D., G.F. Stanley, and W. Chang. 2009. Visitor perception of park soundscapes: A research
plan. Noise/News International 17(2):51-56.
Schuetz, J. 2011. Reproductive declines in an endangered seabird: Cause for concern or signs of
conservation success? Public Library of Science ONE 6(5):e19489.
Semmens, B.X. 2008. Acoustically derived fine-scale behaviors of juvenile Chinook salmon
(Oncorhynchus tshawytscha) associated with intertidal benthic habitats in an estuary. Canadian
Journal of Fisheries and Aquatic Sciences 65(9):2053-2062.
Sorte, C.J.B., S.L. Williams, and J.T. Carlton. 2010. Marine range shifts and species introductions:
Comparative spread rates and community impacts. Global Ecology and Biogeography 19(3):303-
316.
Suryan, R., and J. Harvey. 1999. Variability in reactions of Pacific harbor seals, Phoca vitulina richardsi,
to disturbance. Fishery Bulletin 97:332-339.
The Watershed Company. 2000. A Summary of the Effects of Bulkheads, Piers, and Other Artificial
Surfaces and Shoreline Development on ESA-listed Salmonids in Lakes. Final Report. July 13.
Theoharides, K.A. and J.S. Dukes. 2007. Plant invasion across space and time: Factors affecting
nonindigenous species success during four stages of invasion. New Phytologist 176:256-273.
Thomsen, M.S., T. Wernberg, A.H. Altieri, F. Tuya, D. Gulbransen, K.J. McGlathery, M. Holmer, and B.R.
Silliman. 2010. Habitat cascades: The conceptual context and global relevance of facilitation
cascades via habitat formation and modification. Integrative and Comparative Biology 50:158-
175.
Villanueva-Rivera, L.J., B.C. Pijanowski, J. Doucette, B. Pekin. 2011. A primer of acoustic analysis for
landscape ecologists. Landscape Ecology 26:1233-1246.
Villnas, A., J. Perus, and E. Bonsdorff. 2011. Structural and functional shifts in zoobenthos induced by
organic enrichment - Implications for community recovery potential. Journal of Sea Research
65(1):8-18.
OCR for page 61
References 61
Vinther, H.F., J.S. Laursen, and M. Holmer. 2008. Negative effects of blue mussel (Mytilus edulis)
presence in eelgrass (Zostera marina) beds in Flensborg fjord, Denmark. Estuarine, Coastal and
Shelf Science 77(1):91-103.
Volpe National Transportation Systems Center (Volpe). 2011. Baseline Ambient Sound Levels in Point
Reyes National Seashore. Final Report. March. Western-Pacific Region, Los Angeles, CA. 131
pp.
Warren, P.S., M. Katti, M. Ermann, and A. Brazel. 2006. Urban bioacoustics: It's not just noise. Animal
Behaviour 71:491-502.
Wechsler, J.F. 2005. Assessing the Relationship between the Ichthyofauna and Oyster Mariculture in a
Shallow Coastal Embayment, Drakes Estero, Point Reyes National Seashore. MA Thesis,
University of California, Davis, 42 pp.
White, J.D. 1999. Bird Inventory of Three National Parks of the San Francisco Bay Area: Wintering
Waterbirds and Shorebirds. Point Reyes Bird Observatory, Stinson Beach, California. March.
Williamson, M.A. and A. Fitter. 1996. The varying success of invaders. Ecology 77:1661-1666.
Wisehart, L.M., J.L. Ruesink, S.D. Hacker, and B.R. Dumbauld. 2007. Importance of eelgrass early life
history stages in response to oyster aquaculture disturbance. Marine Ecology Progress Series
344:71-80.
Wonham, M. and J. Carlton. 2005. Trends in marine biological invasions at local and regional scales: The
Northeast Pacific Ocean as a model system. Biological Invasions 7:369-392.
Zieman, J. 1976. The ecological effects of physical damage from motor boats on turtle grass beds in
southern Florida. Aquatic Biology 2:127-139.
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