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Calculating the Secrets of Life: Contributions of the Mathematical Sciences to Molecular Biology (1995)
Commission on Physical Sciences, Mathematics, and Applications (CPSMA)

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201
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Page 201

Benham, C.J., 1992, "Energetics of the strand separation transition in superhelical DNA," Journal of Molecular Biology 225, 835-847.

Benham, C.J., 1993, "Sites of predicted stress-induced DNA duplex destabilization occur preferentially at regulatory loci," Proceedings of the National Academy of Sciences USA 90, 2999-3003.

Bhriain, N. Ni, C. Dorman, and C. Higgins, 1989, "An overlap between osmotic and anaerobic stress responses: A potential role for DNA supercoiling in the coordinate regulation of gene expression," Mol. Microbiol. 3, 933-942.

Dorman, C., G. Barr, N. Ni Bhriain, and C.F. Higgins, 1988, "DNA supercoiling and the anaerobic and growth phase regulation of tonB gene expression," J. Bacteriol. 170, 2816-2826.

Gellert, M., 1981, "DNA topoisomerases," Annu. Rev. Biochem. 50, 879-910.

Hartwig, M., E. Matthes, and W. Arnold, 1981, "Extremely underwound chromosomal DNA in nucleoids of mouse sarcoma cells," Cancer Letters 13, 153-158.

Kowalski, D., and M. Eddy, 1989, "The DNA unwinding element: A novel cis-acting component that facilitates opening of the Escherichia coli replication origin," EMBOJ. 8, 4335-4344.

Kowalski, D., D. Natale, and M. Eddy, 1988, "Stable DNA unwinding, not breathing, accounts for single-strand specific nuclease hypersensitivity of specific A+T-rich regions," Proceedings of the National Academy of Sciences USA 85, 9464-9468.

Malkhosyan, S., Y. Panchenko, and A. Rekesh, 1991, "A physiological role for DNA supercoiling in the anaerobic regulation of colicin gene expression," Mol. Gen. Genet. 225, 342-345.

Marmur, J., and P. Doty, 1962, "Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature," Journal of Molecular Biology 5, 109-118.

Mattern, M., and R. Painter, 1979, "Dependence of mammalian DNA replication on DNA supercoiling," Biochim. Biophys. Acta 563, 293-305.

Pruss, G., and K. Drlica, 1989, "DNA supercoiling and prokaryotic transcription," Cell 56, 521-523.

Schildkraut, C., and S. Lifson, 1968, "Dependence of the melting temperature of DNA on salt concentration," Biopolymers 3, 195-208.

Smith, G., 1981, "DNA supercoiling: Another level for regulating gene expression," Cell 24, 599-600.

Umek, R., M. Linskens, D. Kowalski, and J. Huberman, 1989, "New beginnings in studies of eucaryotic DNA replication origins," Biochem. Biophys. Acta 1007, 1-14.

Weintraub, H., P. Cheng, and K. Conrad, 1986, "Expression of transfected DNA depends on DNA topology," Cell 46, 115-122.

White, J.H., 1988, "An introduction to the geometry and topology of DNA structure," pp. 225-254 in Mathematical Methods for DNA Sequences, M.S. Waterman (ed.), Boca Raton, Fla.: CRC Press.

Wu, H., S. Shyy, J.C. Wang, and L.F. Liu, 1988, "Transcription generates positively and negatively supercoiled domains in the template," Cell 53, 433-440.

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