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Variation and Evolution in Plants and Microorganisms: Toward a New Synthesis 50 Years after Stebbins (2000)
National Academy of Sciences (NAS)

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. "7 Bacteria are Different: Observations, Interpretations, Speculations, and Opinions About the Mechanisms of Adaptive Evolution in Prokaryotes." Variation and Evolution in Plants and Microorganisms: Toward a New Synthesis 50 Years after Stebbins. Washington, DC: The National Academies Press, 2000.

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Variation and Evolution in Plants and Microorganisms: TOWARD A NEW SYNTHESIS 50 YEARS AFTER STEBBINS

and ecological factors that are specific to the bacteria and habitats involved.

There are other conditions that may favor the infectious transfer of accessory elements as well. For example, a number of characters expressed by bacteria of one lineage augment the fitness of bacteria of other lineages in their vicinity whether the beneficiaries carry those genes that code for that character or not. Examples include the production of secreted agents that kill competing bacterial species (e.g., antibiotics and bacteriocins) and somatic cells (e.g., toxins) and those that detoxify or condition the local environment for bacterial growth (e.g., β-lactamases and other enzymes that denature antibiotics exogenously; Lenski and Hattingh, 1986). One consequence is that bacteria not carrying these genes can free-ride on the efforts of those that do. In such cases, infectious gene transfer would provide a way to convert these “cheaters” into good citizens that share the burden as well as the advantages of carrying and expressing these genes (Smith, 2000).

Evolving to Evolve: The Evolution of Infectious Gene Transfer

Thus far, we have considered the mechanisms that can maintain infectiously transmitted genetic elements over evolutionary time. But how did these mechanisms and the capacity for acquisition of genes from without evolve in the first place? We believe that, for accessory genetic elements, the most parsimonious (and possibly even correct) answers to these questions are those that treat the individual genetic elements, rather than their hosts, as the objects of natural selection.

Infectious Gene Transfer as a Product of Coincidental Evolution?

A number of years ago, Richard Lenski and B.R.L. (Levin, 1988; Levin and Lenski, 1983) considered the mechanisms responsible for conjugative plasmids and phages to serve as vehicles (vectors) for the infectious transfer of host genes: plasmid-mediated conjugation and phage-mediated transduction. They postulated that these forms of bacterial sex are coincidental to the infectious transfer of the elements themselves and to the presence of recombination repair enzymes in their host bacteria. Although we are now in a new and doubtless more enlightened millennium, this coincidental evolution hypothesis remains plausible and parsimonious, albeit still not formally tested. Clearly, generalized transduction and plasmid-mediated recombination (such as that by the F+ plasmid of E. coli K-12) are to the disadvantage of the phage and plasmid, respectively. Coincidental evolution also seems a reasonable hypothesis for the propensity of conjugative plasmids and bacteriophages to pick up hitchhik

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Front Matter (R1-R12)
Part I: Early Evolution and the Origin of Cells (1-2)
1 G. Ledyard Stebbins (1906-2000) -- An Appreciation (3-5)
2 Solution to Darwin's Dilemma: Discovery of the Missing Precambrian Record of Life (6-20)
3 The Chimeric Eukaryote: Origin of the Nucleus from the Karyomastigont in Amitochondriate Protists (21-34)
4 Dynamic Evolution of Plant Mitochondrial Genomes: Mobile Genes and Introns and Highly Variable Mutation Rates (35-58)
Part II: Viral and Bacterial Models (59-60)
5 The Evolution of RNA Viruses: A Population Genetics View (61-82)
6 Effects of Passage History and Sampling Bias on Phylogenetic Reconstruction of Human Influenza A Evolution (83-98)
7 Bacteria are Different: Observations, Interpretations, Speculations, and Opinions About the Mechanisms of Adaptive Evolution in Prokaryotes (99-114)
Part III: Protoctist Models (115-116)
8 Evolution of RNA Editing in Trypanosome Mitochondria (117-142)
9 Population Structure and Recent Evolution of Plasmodium falciparum (143-164)
Part IV: Population Variation (165-166)
10 Transposons and Genome Evolution in Plants (167-186)
11 Maize as a Model for the Evolution of Plant Nuclear Genomes (187-210)
12 Flower Color Variation: A Model for the Experimental Study of Evolution (211-234)
13 Gene Genealogies and Population Variation in Plants (235-252)
Part V: Trends and Patterns in Plant Evolution (253-254)
14 Toward a New Synthesis: Major Evolutionary Trends in the Angiosperm Fossil Record (255-270)
15 Reproductive Systems and Evolution in Vascular Plants (271-288)
16 Hybridization as a Stimulus for the Evolution of Invasiveness in Plants? (289-309)
17 The Role of Genetic and Genomic Attributes in the Success of Polyploids (310-330)
Index (331-340)