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Variation and Evolution in Plants and Microorganisms: Toward a New Synthesis 50 Years after Stebbins (2000)
National Academy of Sciences (NAS)

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. "Part III: Protoctist Models." Variation and Evolution in Plants and Microorganisms: Toward a New Synthesis 50 Years after Stebbins. Washington, DC: The National Academies Press, 2000.

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Variation and Evolution in Plants and Microorganisms: TOWARD A NEW SYNTHESIS 50 YEARS AFTER STEBBINS

Part III

PROTOCTIST MODELS

The mitochondrial genome of kinetoplasts is a highly derived genome in which frameshift errors in reading frames are corrected at at the messenger RNA level. “RNA editing” refers to these posttranscriptional modifications, of which two types are known. One consists of the precise insertion or deletion of U residues, so as to produce open reading frames in the messenger RNAs encoded in the organelle DNA known as the maxicircle. The other editing system is a modification of 34 C's into 34 U's in the anticodon of transfer RNA molecules that thus can decode the UGA stop codon as tryptophan. Larry Simpson and colleagues (“Evolution of RNA Editing in Trypanosome Mitochondria,” Chapter 8) seek to unravel the evolution of these two peculiar genetic systems. With support from computer simulations, the authors elaborate an evolutionary scenario that proposes an ancient but unique evolutionary origin for both systems, which may have arisen shortly after the divergence of the trypanosomes and their relatives from the euglenoids.

Stephen M. Rich and Francisco J. Ayala (“Population Structure and Recent Evolution of Plasmodium Falciparum,Chapter 9) summarize data showing absence of synonymous nucleotide polymorphisms in diverse genes from Plasmodium falciparum, the agent of malignant malaria. The inference is that the extant world populations of P. falciparum originated from a single ancestral cell in recent times, estimated to be less than 50,000 years. This inference seems at first incompatible with the existence of numerous amino acid and other polymorphisms in the antigenic genes of

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115
Front Matter (R1-R12)
Part I: Early Evolution and the Origin of Cells (1-2)
1 G. Ledyard Stebbins (1906-2000) -- An Appreciation (3-5)
2 Solution to Darwin's Dilemma: Discovery of the Missing Precambrian Record of Life (6-20)
3 The Chimeric Eukaryote: Origin of the Nucleus from the Karyomastigont in Amitochondriate Protists (21-34)
4 Dynamic Evolution of Plant Mitochondrial Genomes: Mobile Genes and Introns and Highly Variable Mutation Rates (35-58)
Part II: Viral and Bacterial Models (59-60)
5 The Evolution of RNA Viruses: A Population Genetics View (61-82)
6 Effects of Passage History and Sampling Bias on Phylogenetic Reconstruction of Human Influenza A Evolution (83-98)
7 Bacteria are Different: Observations, Interpretations, Speculations, and Opinions About the Mechanisms of Adaptive Evolution in Prokaryotes (99-114)
Part III: Protoctist Models (115-116)
8 Evolution of RNA Editing in Trypanosome Mitochondria (117-142)
9 Population Structure and Recent Evolution of Plasmodium falciparum (143-164)
Part IV: Population Variation (165-166)
10 Transposons and Genome Evolution in Plants (167-186)
11 Maize as a Model for the Evolution of Plant Nuclear Genomes (187-210)
12 Flower Color Variation: A Model for the Experimental Study of Evolution (211-234)
13 Gene Genealogies and Population Variation in Plants (235-252)
Part V: Trends and Patterns in Plant Evolution (253-254)
14 Toward a New Synthesis: Major Evolutionary Trends in the Angiosperm Fossil Record (255-270)
15 Reproductive Systems and Evolution in Vascular Plants (271-288)
16 Hybridization as a Stimulus for the Evolution of Invasiveness in Plants? (289-309)
17 The Role of Genetic and Genomic Attributes in the Success of Polyploids (310-330)
Index (331-340)

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Variation and Evolution in Plants and Microorganisms: TOWARD A NEW SYNTHESIS 50 YEARS AFTER STEBBINS Part III PROTOCTIST MODELS The mitochondrial genome of kinetoplasts is a highly derived genome in which frameshift errors in reading frames are corrected at at the messenger RNA level. “RNA editing” refers to these posttranscriptional modifications, of which two types are known. One consists of the precise insertion or deletion of U residues, so as to produce open reading frames in the messenger RNAs encoded in the organelle DNA known as the maxicircle. The other editing system is a modification of 34 C's into 34 U's in the anticodon of transfer RNA molecules that thus can decode the UGA stop codon as tryptophan. Larry Simpson and colleagues (“Evolution of RNA Editing in Trypanosome Mitochondria,” Chapter 8) seek to unravel the evolution of these two peculiar genetic systems. With support from computer simulations, the authors elaborate an evolutionary scenario that proposes an ancient but unique evolutionary origin for both systems, which may have arisen shortly after the divergence of the trypanosomes and their relatives from the euglenoids. Stephen M. Rich and Francisco J. Ayala (“Population Structure and Recent Evolution of Plasmodium Falciparum,” Chapter 9) summarize data showing absence of synonymous nucleotide polymorphisms in diverse genes from Plasmodium falciparum, the agent of malignant malaria. The inference is that the extant world populations of P. falciparum originated from a single ancestral cell in recent times, estimated to be less than 50,000 years. This inference seems at first incompatible with the existence of numerous amino acid and other polymorphisms in the antigenic genes of

OCR for page 116
Variation and Evolution in Plants and Microorganisms: TOWARD A NEW SYNTHESIS 50 YEARS AFTER STEBBINS the parasite. Rich and Ayala analyze allelic sequences of antigenic genes and conclude that they are consistent with a recent origin of the world populations of P. falciparum. The antigenic polymorphisms come about rapidly by mass natural selection acting on sequence variations originated at high rates by intragenic recombination of short DNA repeats.

Representative terms from entire chapter:

reading frames