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Variation and Evolution in Plants and Microorganisms: Toward a New Synthesis 50 Years after Stebbins (2000)
National Academy of Sciences (NAS)

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. "5 The Evolution of RNA Viruses: A Population Genetics View." Variation and Evolution in Plants and Microorganisms: Toward a New Synthesis 50 Years after Stebbins. Washington, DC: The National Academies Press, 2000.

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Variation and Evolution in Plants and Microorganisms: TOWARD A NEW SYNTHESIS 50 YEARS AFTER STEBBINS

attempt, we discuss pros and cons of the quasispecies theory compared with classic population genetics models for haploid organisms to explain the evolution of RNA viruses.

RNA VIRUSES: BIOLOGICAL AND POPULATION PROPERTIES

Despite their great functional and structural diversity, all RNA viruses share the following properties (Domingo and Holland, 1997): (i) Cell–virus junction is mediated by means of specific membrane receptors. (ii) A viral particle penetrates the cell, loses its capsid, and releases its nucleic acids within the cell. (iii) The replication of the viral genome is regulated by the expression of viral genes (i.e., RNA replicase is encoded by the virus genome). (iv) The component parts of the viruses are assembled and released as virions out of the cell. In addition, these properties are complemented with four others that are relevant to understanding the evolution of RNA viruses. (v) The number of viral particles in a given infected organism may be as high as 1012 (Domingo and Holland, 1997). Such population sizes, several orders of magnitude larger than any population size for DNA-based organisms, are related to viral generation time. (vi) In fact, a single infectious particle can produce, on average, 100,000 copies in 10 h (Domingo and Holland, 1997). If the replication machinery is working optimally, a new RNA genome is produced every 0.4 s. (vii) Genome sizes range between 3 and 30 kb. Accordingly, the number of genes per genome is also very small. (viii) Finally, RNA viruses show extremely high mutation rates (Drake and Holland, 1999). Because of the lack of proofreading by their replicases, RNA viruses show the highest mutation rates among living beings (Drake and Holland, 1999), on the order of one mutation per genome and replication round.

The above-mentioned properties of large population size, high replication rate, and short generation time are responsible, in general, for the extremely high genetic variability of RNA viral populations. Recombination and segmentation also may play an important role in generating new genetic variability (Domingo and Holland, 1997). In any case, the extent of genetic variability per generation time of any RNA virus is usually much higher than that corresponding to any DNA-based organism, providing an excellent opportunity for studying ongoing evolution in accessible terms for human observers.

RNA VIRUSES MEET THE POPULATION GENETICS THEORY OF EVOLUTION: THEORETICAL BACKGROUND

According to population genetics, evolution is the change in the genetic properties of populations. Changes considered to be evolutionarily

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Front Matter (R1-R12)
Part I: Early Evolution and the Origin of Cells (1-2)
1 G. Ledyard Stebbins (1906-2000) -- An Appreciation (3-5)
2 Solution to Darwin's Dilemma: Discovery of the Missing Precambrian Record of Life (6-20)
3 The Chimeric Eukaryote: Origin of the Nucleus from the Karyomastigont in Amitochondriate Protists (21-34)
4 Dynamic Evolution of Plant Mitochondrial Genomes: Mobile Genes and Introns and Highly Variable Mutation Rates (35-58)
Part II: Viral and Bacterial Models (59-60)
5 The Evolution of RNA Viruses: A Population Genetics View (61-82)
6 Effects of Passage History and Sampling Bias on Phylogenetic Reconstruction of Human Influenza A Evolution (83-98)
7 Bacteria are Different: Observations, Interpretations, Speculations, and Opinions About the Mechanisms of Adaptive Evolution in Prokaryotes (99-114)
Part III: Protoctist Models (115-116)
8 Evolution of RNA Editing in Trypanosome Mitochondria (117-142)
9 Population Structure and Recent Evolution of Plasmodium falciparum (143-164)
Part IV: Population Variation (165-166)
10 Transposons and Genome Evolution in Plants (167-186)
11 Maize as a Model for the Evolution of Plant Nuclear Genomes (187-210)
12 Flower Color Variation: A Model for the Experimental Study of Evolution (211-234)
13 Gene Genealogies and Population Variation in Plants (235-252)
Part V: Trends and Patterns in Plant Evolution (253-254)
14 Toward a New Synthesis: Major Evolutionary Trends in the Angiosperm Fossil Record (255-270)
15 Reproductive Systems and Evolution in Vascular Plants (271-288)
16 Hybridization as a Stimulus for the Evolution of Invasiveness in Plants? (289-309)
17 The Role of Genetic and Genomic Attributes in the Success of Polyploids (310-330)
Index (331-340)