National Academies Press: OpenBook
Suggested Citation:"Front Matter." National Academy of Sciences. 2002. (NAS Colloquium) Links Between Recombination and Replication: Vital Roles of Recombination. Washington, DC: The National Academies Press. doi: 10.17226/10501.
×

Colloquium on Links Between Recombination and Replication: Vital Roles of Recombination

National Academy of Sciences
Washington, D.C. 2000

Suggested Citation:"Front Matter." National Academy of Sciences. 2002. (NAS Colloquium) Links Between Recombination and Replication: Vital Roles of Recombination. Washington, DC: The National Academies Press. doi: 10.17226/10501.
×

PNAS

Proceedings of the National Academy of Sciences of the United States of America

Contents

Papers from the National Academy of Sciences Colloquium on Links Between Recombination and Replication: Vital Roles of Recombination

 

 

INTRODUCTION

 

 

 

 

Links between recombination and replication: Vital roles of recombination
Charles Radding

 

8172

 

 

COLLOQUIUM PAPERS

 

 

 

 

Historical overview: Searching for replication help in all of the rec places
Michael M.Cox

 

8173

 

 

Rescue of arrested replication forks by homologous recombination
Bénédicte Michel, Maria-Jose Flores, Enrique Viguera, Gianfranco Grompone, Marie Seigneur, and Vladimir Bidnenko

 

8181

 

 

Circles: The replication-recombination-chromosome segregation connection
François-Xavier Barre, Britta Søballe, Bénédicte Michel, Mira Aroyo, Malcolm Robertson, and David Sherratt

 

8189

 

 

Participation of recombination proteins in rescue of arrested replication forks in UV-irradiated Escherichia coli need not involve recombination
Justin Courcelle and Philip C.Hanawalt

 

8196

 

 

Effects of mutations involving cell division, recombination, and chromosome dimer resolution on a priA2::kan mutant
Jesse D.McCool and Steven J.Sandler

 

8203

 

 

RecA protein promotes the regression of stalled replication forks in vitro
Mara E.Robu, Ross B.Inman, and Michael M.Cox

 

8211

 

 

Topological challenges to DNA replication: Conformations at the fork
Lisa Postow, Nancy J.Crisona, Brian J.Peter, Christine D.Hardy, and Nicholas R.Cozzarelli

 

8219

 

 

Rescue of stalled replication forks by RecG: Simultaneous translocation on the leading and lagging strand templates supports an active DNA unwinding model of fork reversal and Holliday junction formation
Peter McGlynn and Robert G.Lloyd

 

8227

 

 

Formation of Holliday junctions by regression of nascent DNA in intermediates containing stalled replication forks: RecG stimulates regression even when the DNA is negatively supercoiled
Peter McGlynn, Robert G.Lloyd, and Kenneth J.Marians

 

8235

 

 

Single-strand interruptions in replicating chromosomes cause double-strand breaks
Andrei Kuzminov

 

8241

 

 

Handoff from recombinase to replisome: Insights from transposition
Hiroshi Nakai, Victoria Doseeva, and Jessica M.Jones

 

8247

 

 

Break-induced replication: A review and an example in budding yeast
Eliyahu Kraus, Wai-Ying Leung, and James E.Haber

 

8255

 

 

Links between replication and recombination in Saccharomyces cerevisiae: A hypersensitive requirement for homologous recombination in the absence of Rad27 activity
Hélène Debrauwère, Sophie Loeillet, Waka Lin, Judith Lopes, and Alain Nicolas

 

8263

 

 

Evidence that replication fork components catalyze establishment of cohesion between sister chromatids
Dena R.Carson and Michael F.Christman

 

8270

 

 

Rad52 forms DNA repair and recombination centers during S phase
Michael Lisby, Rodney Rothstein, and Uffe H.Mortensen

 

8276

 

 

A yeast gene, MGS1, encoding a DNA-dependent AAA+ATPase is required to maintain genome stability
Takashi Hishida, Hiroshi Iwasaki, Takayuki Ohno, Takashi Morishita, and Hideo Shinagawa

 

8283

 

 

The tight linkage between DNA replication and double-strand break repair in bacteriophage T4
James W.George, Bradley A.Stohr, Daniel J.Tomso, and Kenneth N.Kreuzer

 

8290

 

 

Mediator proteins orchestrate enzyme-ssDNA assembly during T4 recombination-dependent DNA replication and repair
Jill S.Bleuit, Hang Xu, Yujie Ma, Tongsheng Wang, Jie Liu, and Scott W.Morrical

 

8298

 

 

Two recombination-dependent DNA replication pathways of bacteriophage T4, and their roles in mutagenesis and horizontal gene transfer
Gisela Mosig, John Gewin, Andreas Luder, Nancy Colowick, and Daniel Vo

 

8306

Suggested Citation:"Front Matter." National Academy of Sciences. 2002. (NAS Colloquium) Links Between Recombination and Replication: Vital Roles of Recombination. Washington, DC: The National Academies Press. doi: 10.17226/10501.
×

 

 

Bacteriophage T4 gene 41 helicase and gene 59 helicase-loading protein: A versatile couple with roles in replication and recombination
Charles E.Jones, Timothy C.Mueser, Kathleen C.Dudas, Kenneth N.Kreuzer, and Nancy G.Nossal

 

8312

 

 

Instability of repetitive DNA sequences: The role of replication in multiple mechanisms
Malgorzata Bzymek and Susan T.Lovett

 

8319

 

 

Repeat expansion by homologous recombination in the mouse germ line at palindromic sequences
Zhi-Hong Zhou, Ercan Akgün, and Maria Jasin

 

8326

 

 

Stationary-phase mutation in the bacterial chromosome: Recombination protein and DNA polymerase IV dependence
Harold J.Bull, Mary-Jane Lombardo, and Susan M.Rosenberg

 

8334

 

 

Managing DNA polymerases: Coordinating DNA replication, DNA repair, and DNA recombination
Mark D.Sutton and Graham C.Walker

 

8342

 

 

Roles of DNA polymerases V and II in SOS-induced error-prone and error-free repair in Escherichia coli
Phuong Pham, Savithri Rangarajan, Roger Woodgate, and Myron F.Goodman

 

8350

 

 

Accuracy of lesion bypass by yeast and human DNA polymerase η
M.Todd Washington, Robert E.Johnson, Louise Prakash, and Satya Prakash

 

8355

 

 

ATP bound to the origin recognition complex is important for preRC formation
Richard D.Klemm and Stephen P.Bell

 

8361

 

 

Creating a dynamic picture of the sliding clamp during T4 DNA polymerase holoenzyme assembly by using fluorescence resonance energy transfer
Michael A.Trakselis, Stephen C.Alley, Ernesto Abel-Santos, and Stephen J.Benkovic

 

8368

 

 

Interaction of the β sliding clamp with MutS, ligase, and DNA polymerase I
Francisco J.López de Saro and Mike O’Donnell

 

8376

 

 

Defining the roles of individual residues in the single-stranded DNA binding site of PcrA helicase
Mark S.Dillingham, Panos Soultanas, Paul Wiley, Martin R.Webb, and Dale B.Wigley

 

8381

 

 

Homologous DNA recombination in vertebrate cells
Eiichiro Sonoda, Minoru Takata, Yukiko M.Yamashita, Ciaran Morrison, and Shunichi Takeda

 

8388

 

 

Meiotic recombination and chromosome segregation in Schizosaccharomyces pombe
Luther Davis and Gerald R.Smith

 

8395

 

 

Manipulating the mammalian genome by homologous recombination
Karen M.Vasquez, Kathleen Marburger, Zsofia Intody, and John H.Wilson

 

8403

 

 

Assembly of RecA-like recombinases: Distinct roles for mediator proteins in mitosis and meiosis
Stephen L.Gasior, Heidi Olivares, Uy Ear, Danielle M.Hari, Ralph Weichselbaum, and Douglas K.Bishop

 

8411

 

 

Domain structure and dynamics in the helical filaments formed by RecA and Rad51 on DNA
Xiong Yu, Steven A.Jacobs, Stephen C.West, Tomoko Ogawa, and Edward H.Egelman

 

8419

 

 

Homologous genetic recombination as an intrinsic dynamic property of a DNA structure induced by RecA/Rad51-family proteins: A possible advantage of DNA over RNA as genomic material
Takehiko Shibata, Taro Nishinaka, Tsutomu Mikawa, Hideki Aihara, Hitoshi Kurumizaka, Shigeyuki Yokoyama, and Yutaka Ito

 

8425

 

 

The synaptic activity of HsDmc1, a human recombination protein specific to meiosis
R.C.Gupta, E.Golub, B.Bi, and C.M.Radding

 

8433

 

 

Complex formation by the human RAD51C and XRCC3 recombination repair proteins
Jean-Yves Masson, Alicja Z.Stasiak, Andrzej Stasiak, Fiona E.Benson, and Stephen C.West

 

8440

 

 

Rad54 protein stimulates the postsynaptic phase of Rad51 protein-mediated DNA strand exchange
Jachen Armon Solinger and Wolf-Dietrich Heyer

 

8447

 

 

The architecture of the human Rad54-DNA complex provides evidence for protein translocation along DNA
Dejan Ristic, Claire Wyman, Coen Paulusma, and Roland Kanaar

 

8454

 

 

DNA replication meets genetic exchange: Chromosomal damage and its repair by homologous recombination
Andrei Kuzminov

 

8461

Suggested Citation:"Front Matter." National Academy of Sciences. 2002. (NAS Colloquium) Links Between Recombination and Replication: Vital Roles of Recombination. Washington, DC: The National Academies Press. doi: 10.17226/10501.
×
Page R1
Suggested Citation:"Front Matter." National Academy of Sciences. 2002. (NAS Colloquium) Links Between Recombination and Replication: Vital Roles of Recombination. Washington, DC: The National Academies Press. doi: 10.17226/10501.
×
Page R2
Suggested Citation:"Front Matter." National Academy of Sciences. 2002. (NAS Colloquium) Links Between Recombination and Replication: Vital Roles of Recombination. Washington, DC: The National Academies Press. doi: 10.17226/10501.
×
Page R3
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There has been a sea change in how we view genetic recombination. When germ cells are produced in higher organisms, genetic recombination assures the proper segregation of like chromosomes. In the course of that process, called meiosis, recombination not only assures segregation of one chromosome of each type to progeny germ cells, but also further shuffles the genetic deck, contributing to the unique inheritance of individuals. In a nutshell, that is the classical view of recombination. We have also known for many years that in bacteria recombination plays a role in horizontal gene transfer and in replication itself, the latter by establishing some of the replication forks that are the structural scaffolds for copying DNA.

In recent years, however, we have become increasingly aware that replication, which normally starts without any help from recombination, is a vulnerable process that frequently leads to broken DNA. The enzymes of recombination play a vital role in the repair of those breaks. The recombination enzymes can function via several different pathways that mediate the repair of breaks, as well as restoration of replication forks that are stalled by other kinds of damage to DNA. Thus, to the classical view of recombination as an engine of inheritance we must add the view of recombination as a vital housekeeping function that repairs breaks suffered in the course of replication. We have also known for many years that genomic instability—including mutations, chromosomal rearrangements, and aneuploidy—is a hallmark of cancer cells. Although genomic instability has many contributing causes, including faulty replication, there are many indications that recombination, faulty or not, contributes to genome instability and cancer as well.

The (Nas colloquium) Links Between Recombination and Replication: Vital Roles of Recombination was convened to broaden awareness of this evolving area of research. Papers generated by this colloquium are published here. To encourage the desired interactions of specialists, we invited some contributions that deal only with recombination or replication in addition to contributions on the central thesis of functional links between recombination and replication. To aid the nonspecialist and specialist alike, we open the set of papers with a historical overview by Michael Cox and we close the set with a commentary on the meeting and the field by Andrei Kuzminov.

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