Able, K.W. 2005. A re-examination of fish estuarine dependence: evidence for connectivity between estuarine and ocean habitats. Estuarine, Coastal, and Shelf Science 64(1):5-17.
Ahlering M.A., and J. Faaborg. 2006. Avian Habitat Management Meets Conspecific Attraction: If you build it, will they come? A Quarterly Journal in Ornithology 123(2):301-312.
Ahmadi‐Nedushan, B., A. St‐Hilaire, M. Bérubé, É. Robichaud, N. Thiémonge, and B. Bobée. 2006. A review of statistical methods for the evaluation of aquatic habitat suitability for instream flow assessment. River Research and Applications 22(5):503-523.
Ainsworth, C.H., M.J. Schirripa, and H.N. Morzaria Luna. 2015. An Atlantis ecosystem model for the northern Gulf of Mexico supporting integrated ecosystem management. NOAA Technical Memorandum NMFS-SEFSC-TM-676. Silver Spring, MD: NOAA.
Alexander, S., J. Aronson, O. Whaley, and D. Lamb. 2016. The relationship between ecological restoration and the ecosystem services concept. Ecology and Society 21(1):34.
Allen, S, A.C. Carpenter, M. Luckenbach, K. Paynter, A. Sowers, E. Weissberger, J. Wesson, and S. Westby. 2011. Restoration Goals, Quantitative Metrics and Assessment Protocols for Evaluating Success on Restored Oyster Reef Sanctuaries. Sustainable Fisheries Goal Implementation Team of the Chesapeake Bay Program. 32 pp.
Allison, M.A., and E.A. Meselhe. 2010. The use of large water and sediment diversions in the lower Mississippi River (Louisiana) for coastal restoration. Journal of Hydrology 387(3):346-360.
Anderson, C.N., C.H. Hsieh, S.A. Sandin, R. Hewitt, A. Hollowed, J. Beddington, R.M. May, and G. Sugihara. 2008. Why fishing magnifies fluctuations in fish abundance. Nature 452:835-839.
Anderson, D.R., K.P. Burnham, and W.L. Thompson. 2000. Null hypothesis testing: problems, prevalence, and an alternative. Journal of Wildlife Management 64:912-923.
Anderson, D.R., W.A. Link, D.H. Johnson, and K.P. Burnham. 2001. Suggestions for presenting the results of data analyses. Journal of Wildlife Management 65(3):373-378.
Ardron, J.A., H.P. Possingham and C.J. Klein, eds. 2010. Marxan Good Practices Handbook, Version 2. Victoria, BC, Canada: Pacific Marine Analysis and Research Association.
Argent, R.M., R.S. Sojda, C. Guipponi, B.S. Mcintosh, A.A. Voinov, and H.R. Maier. Best practices for conceptual modelling in environmental planning and management. Environmental Modelling and Software 80:113-121. doi: 10.1016/j.envsoft.2016.02. 023.
Atkinson, A.J., P.C. Trenham, R.N. Fisher, S.A. Hathaway, B.S. Johnson, S.G. Torres, and Y.C. Moore. 2004. Designing Monitoring Programs in an Adaptive Management Context for Regional Multiple Species Conservation Plans. Sacramento, CA: US Geological Survey Western Ecological Research Center.
Baggett, L.P., S.P. Powers, R. Brumbaugh, L.D. Coen, B. DeAngelis, J. Green, B. Hancock, and S. Morlock. 2014. Oyster habitat restoration monitoring and assessment handbook. Arlington, VA: The Nature Conservancy.
Baggett, L.P., S.P. Powers, R.D. Brumbaugh, L.D Coen, B. DeAngelis, J. Greene, B. Hancock, S. Morlock, B. Allen, D. Breitburg, D. Bushek, J.H. Grabowski, R. Grizzle, T. Grosholz, M. La Peyre, M. Luckenbach, K. McGraw, M.F. Piehler, S. Westby, and P.S.E. zu Ermgassen. 2015. Setting guidelines for evaluating performance of oyster habitat restoration. Restoration Ecology 23:737-745.
Baker, S., and K. Eckerberg. 2013. A policy analysis perspective on ecological restoration. Ecology and Society 18(2):17.
Baker, S., and K. Eckerberg, K. 2016. Ecological restoration success: A policy analysis understanding. Restoration Ecology 24:284–290. doi: 10.1111/rec.12339
Barnes, T. 2005. Caloosahatchee Estuary conceptual ecological model. Wetlands 25(4):884-897.
Barros, N.B. and D.K. Odell. 1990. Food habits of bottlenose dolphins in the southeastern United States. Pp. 309-328 in The Bottlenose Dolphin. S. Leatherwood and R. Reeves, eds. San Diego, CA: Academic Press.
Bartlett, D. and J. Smith, Eds. 2001. GIS for Coastal Zone Management. Boca Raton, FL:
CRC Press. http://arch.her.hcmr.gr/GISCoast.pdf.
Bartol, I.K. and R. Mann. 1997. Small-scale settlement patterns of the oyster Crassostrea virginica on a constructed intertidal reef. Bulletin of Marine Science 61:881-897.
Bayne, E.M., and B.C. Dale. 2011. Effects of energy development on songbirds. Pp. 95-114 in Energy development and wildlife conservation in western North America. Washington, DC: Island Press/Center for Resource Economics.
Bechdel, S.E., M.S. Mazzoil, M.E. Murdoch, E.M. Howells, J.S. Reif, and S.D. McCulloch. 2009. Prevalence and impacts of motorized vessels on bottlenose dolphins (Tursiops truncatus) in the Indian River Lagoon, Florida. Aquatic Mammals 35(3):367-377.
Beck, M.W., K.L. Heck, K.W. Able, D.L. Childers, D.B. Eggleston, B.M. Gillanders, B. Halpern, C.G. Hays, K. Hoshino, T.J. Minello, and R.J. Orth. 2001. The identification, conservation, and management of estuarine and marine nurseries for fish and invertebrates. Bioscience 51:633-641.
Beck, M.W., R.D. Brumbaugh, L. Airoldi, A. Carranza, L.D. Coen, C. Crawford, O. Defeo, G. J. Edgar, B. Hancock., M.C. Kay, H.S. Lenihan, M.W. Luckenbach, C.L. Toropova, G. Zhang, and X. Guo. 2011. Oyster reefs at risk and recommendations for conservation, restoration and management. BioScience 61:107-116.
Benayas, J.R.M., A.C. Newton, A. Diaz, and J.M. Bullock. 2009. Enhancement of biodiversity and ecosystem services by ecological restoration: A meta-analysis. Science 325(5944):1121-4.
Benedetti-Cecchi, L. 2001. Beyond BACI: Optimization of environmental sampling designs through monitoring and simulation. Ecological Applications 11(3):783-799.
Bergquist, D.C., J.A. Hale, P. Baker, and S.M. Baker. 2006. Development of ecosystem indicators for the Suwannee River estuary: Oyster reef habitat quality along a salinity gradient. Estuaries and Coasts 29:353–360.
Bildstein, K.L., W. Post, J. Johnston, and P. Frederick. 1990. Freshwater wetlands, rainfall, and the breeding ecology of white ibises in coastal South Carolina. The Wilson Bulletin 102(1):84-98.
Bjorndal, K.A., B.W. Bowen, M. Chaloupka, L.B. Crowder, S.S. Heppell, C.M. Jones, M.E. Lutcavage, D. Policansky, A.R. Solow, and B.E. Witherington. 2011. Better science needed for restoration of the Gulf of Mexico. Science 331:537-538.
Blake, R., R. Khanbilvardi, L. Ferrand, D. Rind, and C. Rosenzweig. 2015. Assessing climate change impacts on Jamaica’s Rio Cobre River Basin. Pp. 185-193 in Hydrology in the Humid Tropical Environment: Proceedings of a Symposium Held at Kingston, Jamaica, November 1996. A.I. Johnson, and C.A. Fernández-Jáuregui, eds. IAHS Publ. 253. Wallingford, Oxfordshire, UK: International Association of Hydrological Sciences.
Block, W.M., A.B. Franklin, J.P. Ward, Jr., J.L. Ganey, and G.C. White. 2001. Design and implementation of monitoring studies to evaluate the success of ecological restoration on wildlife. Restoration Ecology 9:293-303.
Bormann, B.T., J.R. Martin, F.H. Wagner, G. Wood, J. Alegria, P.G. Cunningham, M.H. Brookes, P. Friesema, J. Berg, and J. Henshaw. 1999. Adaptive management. Pp. 505-534 in Ecological Stewardship: A common reference for ecosystem management. N.C. Johnson, A.J. Malk, W. Sexton, and R. Szaro, eds. Amsterdam: Elsievier.
Boulinier, T. and E. Danchin. 1997. The use of conspecific reproductive success for breeding patch selection in terrestrial migratory species. Evolutionary Ecology, 11(5):505-517.
Brumbaugh, R.D., M.W. Beck, L.D. Coen, L. Craig, and P. Hicks, 2006. A practitioners’ guide to the design and monitoring of shellfish restoration projects: An ecosystem services approach. MRD Educational Report No. 22. Arlington, VA: The Nature Conservancy.
Bryan, B.A. 2003. Physical environmental modeling, visualization and query for supporting landscape planning decisions. Landscape and Urban Planning 65(4):237-259.
Bulleri, F., J.F. Bruno, and L. Benedetti-Cecchi. 2008. Beyond competition: Incorporating positive interactions between species to predict ecosystem invasibility. PLoS Biology 6(6):e162.
Burdick, D.M., M. Dionne, R.M. Boumans, and F.T. Short. 1997. Ecological responses to tidal restorations of northern New England salt marshes. Wetlands Ecology and Management 4(2):129-144.
Burrows, F., J.M. Harding, R. Mann, R. Dame, and L. Coen, 2005. Chapter 4, Restoration monitoring of oyster reefs, pages 4.2-4.73. In Science-Based Restoration Monitoring of Coastal Habitats, Volume Two: Tools for Monitoring Coastal Habitats. G.W., Thayer, T.A. McTigue, R.J. Salz, D.H. Merkey, F.M. Burrows, and P.F. Gayaldo, eds. NOAA
Coastal Ocean Program Decision Analysis Series No. 23. Silver Spring, MD: NOAA National Centers for Coastal Ocean Science. http://coastalscience.noaa.gov/research/docs/rmv2/Ch4Bundle.pdf.
Caffey, R., H. Wang, and D.R. Petrolia. 2014. Trajectory economics: Assessing the flow of ecosystem services from coastal restoration. Ecological Economics 100:74-84.
Cake Jr., E.W., 1983. Habitat Suitability Index models: Gulf of Mexico Eastern oyster. FWS/OBS-82/10.57. Washington, DC: U.S. Fish and Wildlife Service.
Calow, P.P. 2009. Encyclopedia of Ecology and Environmental Management. Hoboken, NJ: John Wiley and Sons.
Campbell, P. 2009. Data’s shameful neglect. Nature 461(7261):145. doi: 10.1038/461145a.
Carlsson, J., R.B. Barnegie, J.F. Cordes, M.P. Hare, A.T. Leggett, and K.S. Reece. 2008. Evaluating recruitment contribution of a selectively bred aquaculture line of the oyster, Crassostrea virgnica used in restoration efforts. Journal of Shellfish Research 27(5):1117-1124. doi: 10.2983/0730-8000-27.5.1117
Carwardine, J., C.J. Klein, K.A. Wilson, R.L. Pressey, and H.P. Possingham. 2009. Hitting the target and missing the point: Target-based conservation planning in context. Conservation Letters 2:4-11. doi: 10.1111/j.1755-263X.2008.00042.x.
Caughlan, L., and K.L. Oakley. 2001. Cost considerations for long-term ecological monitoring. Ecological Indicators 1(2):123-134.
Center for Ocean Solutions. 2011. Decision Guide: Selecting Decision Support Tools for Marine Spatial Planning. Stanford, CA: Stanford Woods Institute for the Environment.
CERP (Comprehensive Everglades Restoration Plan). 2006. RECOVER: Assessment Team Final 2006 System Status Report. Jacksonville, FL: U.S. Army Corps of Engineers. http://220.127.116.11/pm/recover/assess_team_ssr_2006.aspx
CERP. 2007. RECOVER: Assessment Team Final 2007 System Status Report. Jacksonville, FL: U.S. Army Corps of Engineers. http://18.104.22.168/pm/recover/assess_team_ssr_2007.aspx
CERP. 2009. RECOVER: 2009 System Status Report. Jacksonville, FL: U.S. Army Corps of Engineers. http://22.214.171.124/pm/recover/assess_team_ssr_2009.aspx
CERP. 2012a. Project Level Monitoring and Assessment. Guidance Memorandum 040.02. Jacksonville, FL: U.S. Army Corps of Engineers.
CERP. 2012b. RECOVER: 2012 System Status Report Interim Update. Jacksonville, FL: U.S. Army Corps of Engineers. http://126.96.36.199/pm/ssr_2012/ssr_main_2012.aspx
CERP. 2014. RECOVER: 2014 System Status Report. Jacksonville, FL: U.S. Army Corps of Engineers. http://188.8.131.52/pm/ssr_2014/ssr_main_2014.aspx
Chagaris, D.D., B. Mahmoudi, C.J. Walters, and M.S. Allen. 2015. Simulating the trophic impacts of fishery policy options on the West Florida Shelf using ecopath with Ecosim. Marine and Coastal Fisheries 7(1):44-58.
Chapman, C.A., and L.J. Chapman. 1999. Forest restoration in abandoned agricultural land: A case study from East Africa. Conservation Biology 13:1301-1311.
Chapman, M.G. 1999. Improving sampling designs for measuring restoration in aquatic habitats. Journal of Aquatic Ecosystem Stress and Recovery 6:235-251.
Chapman, M.G., and A.J. Underwood. 2000. The need for a practical scientific protocol to measure successful restoration. Wetlands (Australia) 19:28-49.
Charkhian, B. 2015. Appendix 2-3: Annual permit report for the Biscayne Bay Coastal Wetlands—L-31 East Culverts and Deering Estate Flow-way. Permit Report (May 1, 2013-April 30, 2014). Permit Number: 0271729. In 2015 South Florida Environmental Report. West Palm Beach, FL: South Florida Water Mangement District.
Charles, A. 2012. People, oceans and scale: Governance, livelihoods and climate change adaptation in marine social-ecological systems. Current Opinion in Environmental Sustainability 4(3):351-357.
Chauvaud, S., C. Bouchon, and R. Maniere. 1998. Remote sensing techniques adapted to high resolution mapping of tropical coastal marine ecosystems (coral reefs, seagrass beds and mangrove). International Journal of Remote Sensing 19(18):3625-3639.
Chmura, G.L., D.M. Burdick, and G.E. Moore. 2012. Recovering salt marsh ecosystem services through tidal restoration. In Tidal Marsh Restoration: A Synthesis of Science and Practice. Washington, DC: Island Press.
Chon, T.S. 2011. Self-organizing maps applied to ecological sciences. Ecological Informatics 6(1):50-61.
Christian, R.R., P.M. DiGiacomo, T.C. Malone, and L. Talaue-McManus. 2006. Perspectives in estuarine and coastal science. Opportunities and challenges of establishing coastal
observing systems. Estuaries and Coasts 29:871-875.
Civille, J.C., K. Sayce, S.D. Smith, and D.R. Strong, 2005. Reconstructing a century of Spartina alterniflora invasion with historical records and contemporary remote sensing. Ecoscience 12:330.
Clark, J.S., S.R. Carpenter, M. Barber, S. Collins, A. Dobson, J.A. Foley, D.M. Lodge, M. Pascual, R. Pielke Jr., W. Pizer, C. Pringl, W.V. Reid, K.A. Rose, O. Sala, W.H. Schleslinger, D.H. Wall, and D. Wear. 2001. Ecological forecasts: an emerging imperative. Science 293(5530):657-660.
Clewell, A., J. Rieger, and J. Munro. 2005. Guidelines for Developing and Managing Ecological Restoration Projects. Second edition. Washington, DC: Society for Ecological Restoration.
Clewell, A.F., and J. Aronson. 2013. Ecological Restoration: Principles, Values, and Structure of an Emerging Profession. Second edition. Washington, DC: Island Press.
Coen, L.D., and R.E. Grizzle. 2016. Bivalve Molluscs. Pp. 89-109 in Encyclopedia of Estuaries. M.J. Kennish, ed. Dordrecht, Netherlands: Springer.
Coen, L.D. and A. Humphries. 2016. Oyster-generated marine habitats: Their services, enhancement, restoration, and monitoring. In Routledge Handbook of Ecological and Environmental Restoration. S. Murphy, and S. Allison, eds. Cambridge, U.K.: Taylor and Francis Group, Routledge.
Coen, L.D. and M.W. Luckenbach. 2000. Developing success criteria and goals for evaluating oyster reef restoration: Ecological function or resource exploitation? Ecological Engineering 15:323-343.
Coen, L.D., D.M. Knott, E.L. Wenner, N.H. Hadley, and A.H. Ringwood. 1999. Intertidal oyster reef studies in South Carolina: Design, sampling and experimental focus for evaluating habitat value and function. Pp. 131-156 in Oyster Reef Habitat Restoration: A Synopsis and Synthesis of Approaches. M.W. Luckenbach, R. Mann, J.A. Wesson, eds. Gloucester Point, VA: VIMS Press.
Coen, L., K. Walters, D. Wilber, and N. Hadley. 2004. A SC Sea Grant Report of a 2004 Workshop to Examine and Evaluate Oyster Restoration Metrics to Assess Ecological Function, Sustainability and Success Results and Related Information. Sea Grant Publication. 27 pp. http://www.oyster-restoration.org/scsg04/SCSG04.pdf.
Coleman, H.M., G. Kanat, and I.A. Turkdogen. 2009. Restoration of the Golden Horn Estuary (Halic). Water Research 43(20):4989-5003. doi: 10.1016/j.watres.2009.08.047.
Collins, S.L., S.R. Carpenter, S.M. Swinton, D.E. Orenstein, D.L. Childers, T.L. Gragson, N.B. Grimm, J.M. Grove, S.L. Harlan, J.P. Kaye, and A.K. Knapp. 2010. An integrated conceptual framework for long-term social-ecological research. Frontiers in Ecology and the Environment 9(6):351-357.
Connolly, R.M., S. Bunn, M. Campbell, B. Escher, J. Hunter, P. Maxwell, T. Page, S. Richmond, D. Rissik, A. Roiko, J. Start, and P. Teasdale. 2013. Review of the use of report cards for monitoring ecosystem and waterway health. Queensland, Australia: Gladstone Healthy Harbour Partnership.
Convertino, M., K. Baker, C. Lu, J.T. Vogel, K. McKay, and I. Linkow. 2013. Metric Selection for Ecosystem Restoration. Vicksburg, MS: USACE Engineer Research and Development Center, Ecosystem Management and Restoration Research Program. http://el.erdc.usace.army.mil/elpubs/pdf/eba19.pdf.
Conway, C.J. 2011. Standardized North American marsh bird monitoring protocol. Waterbirds 34:319-346.
CPRA (Louisiana Coastal Protection and Restoration Authority). 2012. Coastal Master Plan. http://coastal.la.gov/a-common-vision/2012-coastal-master-plan. 2017 Master Plan update: http://coastal.la.gov/2017-coastal-master-plan (in progress).
Craft, C., P. Megonigal, S. Broome, J. Stevenson, R. Freese, J. Cornell, L. Zheng, and J. Sacco. 2003. The pace of ecosystem development of constructed Spartina alterniflora marshes. Ecological Applications 13: 1417-1432.
Dahl, T.E., and S.M. Stedman. 2013. Status and trends of wetlands in the coastal watersheds of the Conterminous United States 2004 to 2009. Washington, DC: U.S. Department of the Interior, Fish and Wildlife Service and National Oceanic and Atmospheric Administration, National Marine Fisheries Service.
Davis, S.M., D.L. Childers, J.J. Lorenz, H.R. Wanless, and T.E. Hopkins. 2005. A conceptual model of ecological interactions in the mangrove estuaries of the Florida Everglades. Wetlands 25(4):832-842.
de Araujo Barbosa, C.C., P.M. Atkinson, and J.A. Dearing. 2015. Remote sensing of ecosystem services: A systematic review. Ecological Indicators 52:430-443.
Dias, L., and L.P. Garrison. 2015. Distribution and Abundance of Cetaceans in the Northern Gulf of Mexico. 169 DWHNRDA Marine Mammal Technical Working Group Report.
Dibble, K.L., and L.A. Meyerson. 2012. Tidal flushing restores the physiological condition of fish residing in degraded salt marshes. PLoS ONE 7(9): e46161. doi:10.1371/journal. pone. 0046161.
Diefenderfer, H.L., and R.M. Thom. 2003. Systematic Approach to Coastal Ecosystem Restoration. Prepared for National Oceanic and Atmospheric Administration. Richland, WA: Battelle Marine Sciences Laboratory. http://chapter.ser.org/northwest/files/2012/08/NOAA_systematic_coastal_restoration.pdf.
Dionne, M., F.T. Short, and D.M. Burdick. 1999. Fish utilization of restored, created, and reference salt marsh habitat in the Gulf of Maine. American Fisheries Society Symposium 22:384-404.
Doney, S.C., V.J. Fabry, R.A. Feely, and J.A. Kleypas. 2009. Ocean acidification: The other CO2 problem. Annual Review of Marine Science 1:169-92.
Doney, S.C., M. Ruckelshaus, J.E. Duffy, J.P. Barry, F. Chan, C.A. English, H.M. Galindo, J.M. Grebmeier, A.B. Hollowed, N. Knowlton, J. Polovina, N.N. Rabalais, W.J. Sydeman, and L.D. Talley. 2012. Climate change impacts on marine ecosystems. Annual Review of Marine Science 4:11-37.
Downs, P.W., and G.M. Kondolf. 2002. Post-project appraisals in adaptive management of river channel restoration. Environmental Management 29: 477-496. doi: 10.1007/s00267-001-0035-X.
Draugelis-Dale, R. 2008. Assessment of effectiveness and limitations of habitat suitability models for wetland restoration. U.S. Geological Survey Open-File Report 2007-1254. Washington, DC: U.S. Geological Survey.
Drociak, J. and G. Bottitta. 2005. A Volunteer’s Handbook for Monitoring New Hampshire Salt Marshes. Portsmouth, NH: New Hampshire Department of Environmental Services. http://des.nh.gov/organization/commissioner/pip/publications/wd/documents/wd-04-21.pdf.
Duncan, C. D. and R. W. Havard. 1980. Pelagic birds of the northern Gulf of Mexico. American Birds 34.122-132.
Duncan, D.H. and P.A. Vesk. 2013. Examining change over time in habitat attributes using Bayesian reinterpretation of categorical assessments. Ecological Applications 23(6): 1277-1287.
DWH NRDA Trustees (Deepwater Horizon Natural Resource Damage Assessment Trustees). 2016. Deepwater Horizon oil spill: Final Programmatic Damage Assessment and Restoration Plan and Final Programmatic Environmental Impact Statement. http://www.gulfspillrestoration.noaa.gov/restoration-planning/gulf-plan.
Eberhardt, L.L. and J.M. Thomas. 1991. Designing environmental field studies. Ecological Monographs 61(1):53-73.
Eden, S. and S. Tunstall. 2006. Ecological versus social restoration? How urban river restoration challenges but also fails to challenge the science-policy nexus in the United Kingdom. Environment and Planning C: Government and Policy 24:661-680.
Edwards, S., R. McManus, and C. Moser. 2011. Restoring the Ecological Health of the Gulf of Mexico: Attributes, Principles and Recommendations. Briefing Paper for Delegates to State of the Gulf of Mexico Summit, Houston, Texas, 5-8 December 2011. Gland, Switzerland: International Union for Conservation of Nature.
Eleuterius, L.N. 1987. Seagrass ecology along the coast of Alabama, Louisiana, and Mississippi. Pp. 11-24 in Proceedings of the Symposium on Subtropical-tropical Seagrasses of the Southeastern United States, St. Petersburg, Florida, 12 August, 1985, M.J. Durako, R.C. Phillips, and R.R. Lewis III, eds. Florida Marine Research Publication No. 42. St. Petersburg, FL: Florida Department of Natural Resources, Bureau of Marine Research.
ELI (Environmental Law Institute) and Tulane Institute on Water Resources Law and Policy. 2014. Deepwater Horizon Restoration and Recovery Funds: How Much, Going Where, For What? Washington, DC: ELI. http://eli-ocean.org/wp-content/blogs.dir/2/files/Funding-DH-Restoration-Recovery.pdf.
Elphick, C.S. and C.R. Field. 2014. Monitoring indicators of climate change along long Island Sound: A simple protocol for collecting baseline data on marsh migration. Wetland Science and Practice 31:7-9.
Elphick, C.S., S. Meiman, and M.A. Rubega. 2015. Tidal‐flow restoration provides little nesting habitat for a globally vulnerable saltmarsh bird. Restoration Ecology 23(4):439-446.
EIA (Energy Information Administration). 2015. Gulf of Mexico fact sheet. http://www.eia.gov/special/gulf_of_mexico/.
Erwin, R.M., J. G. Haig, D. Stotts, and J.S. Hatfield. 1996. Dispersal and habitat use by post-fledging juvenile snowy egrets and black-crowned night-herons. The Wilson Bulletin 108(2):342-356.
Exxon Valdez Oil Spill Trustee Council. 1993. Exxon Valdez Oil Spill Restoration: Final Work Plan. Achorage, AK: Exxon Valdez Oil Spill Trustee Council. http://www.evostc.state.ak.us/Universal/Documents/Restoration/1994Restorationplan.pdf.
Farmer, A.H. and A.H. Parent. 1997. Effects of the landscape on shorebird movements at spring migration stopovers. Condor 99(3):698-707.
FGDC (Federal Geographic Data Committee). 2012. Content Standard for Digital Geospatial Metadata Workbook. Reston, VA: U.S. Geological Survey. https://www.fgdc.gov/metadata/metadata-publications-list.
Ferguson, R.L., and K. Korfmacher. 1997. Remote sensing and GIS analysis of seagrass meadows in North Carolina, USA. Aquatic Botany 58:241-258.
Fischenich, C., and C. Vogt. 2012. The application of Adaptive Management to ecosystem restoration projects. EBA Technical Notes Collection. ERDC TN-EMRRP-EBA-10. Vicksburg, MS: U.S. Army Engineer Research and Development Center.
Fischenich, J.C., and T.K. Barnes. 2014. Case Study: Southwest Coastal Louisiana Conceptual Ecosystem Model Development (No. ERDC-TN-EMRRP-EBA-22). Vicksburg, MS: U.S. Army Corps of Engineers Research and Development Center, Ecosystem Management and Restoration Research Program.
Folse, T.M., L.A. Sharp, J. L. West, M.K. Hymel, J.P. Troutman, T.E. McGinnis, D. Weifenbach, W.M. Boshart, L.B. Rodrigue, D.C. Richardi, W. Bernard Wood, and C.M. Miller. 2014. A Standard Operating Procedures Manual for the Coastwide Reference Monitoring System-Wetlands: Methods for Site Establishment, Data Collection, and Quality Assurance/Quality Control. Baton Rouge, LA: Louisiana Coastal Protection and Restoration Authority.
Foundations of Success. 2009. Conceptualizing and Planning Conservation Projects and Programs: A Training Manual. Bethesda, MD: Foundations of Success.
Fulton, E.A., J.S. Link, I.C. Kaplan, M. Savina-Rolland, P. Johnson, C. Ainsworth, P. Horne, R. Gorton, R.J. Gamble, A.D. Smith, and D.C. Smith. 2011. Lessons in modelling and management of marine ecosystems: the Atlantis experience. Fish and Fisheries 12(2):171-88.
Gambordella, M., L. McEachron, C. Beals, and W. S. Arnold 2007. Establishing baselines for monitoring the response of oysters in southeast Florida to changes in freshwater input. Final Report. Washington, DC: National Park Service.
Gentile, J.H., M.A. Harwell, W. Cropper, Jr., C.C. Harwell, D. DeAngelis, S. Davis, J.C. Ogden, and D. Lirman. 2001. Ecological conceptual models: A framework and case study on ecosystem management for South Florida sustainability. Science of the Total Environment 274(1-3):231-53.
Gilbert, R.O. 1987. Statistical Methods for Environmental Pollution Monitoring. Hoboken, NJ: John Wiley and Sons.
Goldman R.L., H. Tallis, P. Kareiva, and G.C. Daily. 2008. Field evidence that ecosystem service projects support biodiversity and diversify options. Proceedings of the National Academy of Sciences of the United States of America 105:9445-9448 doi:10.1073/pnas. 0800208105.
Gore, J.A. and J.M. Nestler. 2006. Instream flow studies in perspective. Regulated Rivers: Research and Management 2(2):93-101.
Grant, W.E. and W.L. Griffin. 1979. A bioeconomic model of the Gulf of Mexico shrimp fishery. Transactions of the American Fisheries Society 108(1):1-13.
Green, E.P., C.D. Clark, P.J. Mumby, A.J. Edwards, and A. Ellis. 1998. Remote sensing techniques for mangrove mapping. International Journal of Remote Sensing 19:935-956.
Green, R.H. 1979. Sampling design and statistical methods for environmental biologists. 2nd Edition. Hoboken, NJ: John Wiley and Sons.
Gregory, R., D. Ohlson, and J. Arvai. 2006. Deconstructing adaptive management: Criteria for applications to environmental management. Ecological Applications 16(6):2411-2425.
Grizzle, R.E., J.R. Adams, and L.J. Walters. 2002. Historical changes in intertidal oyster (Crassostrea virginica) reefs in a Florida lagoon potentially related to boating activities. Journal of Shellfish Research 21:749-756.
Grizzle, R.E., L.G. Ward, J.R. Adams, S.J. Dijkstra, and B. Smith. 2005. Mapping and characterizing oyster reefs using acoustic techniques, underwater videography, and quadrat counts. pp. 153-160, In: Benthic Habitats and the Effects of Fishing. P.W. Barnes and J.P. Thomas, eds. American Fisheries Society Symposium 41. Bethesda, MD: American Fisheries Society.
Grizzle, R.E., M. Brodeur, H. Abeels, and J.K. Greene. 2008. Bottom habitat mapping using towed underwater videography: subtidal
oyster reefs as an example application. Journal of Coastal Research 24:103-109.
Groffman, P.M., C. Stylinski, M.C. Nisbet, C.M. Duarte, R.Jordan, A. Burgin, M.A. Previtali, and J. Coloso. 2010. Restarting the conversation: Challenges at the interface between ecology and society. Frontiers in Ecology and the Environment 8:284-291.
Gross, J.E. 2003. Developing conceptual models for monitoring programs. Fort Collins, CO: National Park Service Inventory and Monitoring Program. http://science.nature.nps.gov/im/monitor/docs/Conceptual_Modelling.pdf.
Groves, G.R. and T.R. Game, eds. 2015. Conservation Planning: Informed Decisions for a Healthier Planet. Greenwood Village, CO: Roberts and Company.
Gulf Coast Ecosystem Restoration Task Force. 2011. Gulf of Mexico Regional Ecosystem Restoration Strategy. Washington, DC: U.S. Environmental Protection Agency.
Hackett E.J., J.N. Parker, D. Conz, D. Rhoten, A. Parker. 2008. Ecology transformed: The National Center for Ecological Analysis and Synthesis and the changing patterns of ecological research. Pp. 277-296 in Scientific Collaboration on the Internet. G.M. Olson, A. Zimmerman, and N. Bos, eds. Boston, MA: MIT Press.
Hagen, D., and M. Evju. 2013. Using short-term monitoring data to achieve goals in a large-scale restoration. Ecology and Society 18(3):29.
Haig, S.M., D.W. Mehlman, and L.W. Oring. 1998. Avian movements and wetland connectivity in landscape conservation. Conservation Biology 12:749-758.
Halldórsson, G., Á.L. Aradóttir, A.M. Fosaa, D. Hagen, C. Nilsson, K. Raulund-Rasmussen, A. B. Skrindo, K. Svavarsdóttir, and A. Tolvanen. 2012. ReNo: Restoration of Damaged Ecosystems in the Nordic Countries. Copenhagen: Nordic Council of Ministers.
Hampton S.E. and J.N. Parker. 2011. Collaboration and productivity in scientific synthesis. Bioscience 61: 900-910.
Handley, L., D. Altsman, and R. DeMay, eds. 2007. Seagrass status and trends in the northern Gulf of Mexico: 1940-2002. U.S. Geological Survey Scientific Investigations Report 2006-5287. Washington, DC: U.S. Geological Survey. http://pubs.usgs.gov/sir/2006/5287.
Hanley, T.C., A.R. Hughes, B. Williams, H. Garland, and D.L. Kimbro. 2016. Effects of intraspecific diversity on survivorship, growth, and recruitment of the eastern oyster across sites. Ecology 97:1518-1529.
Harding, J.M., M.J. Southworth, R. Mann, and J.A. Wesson. 2012. Comparison of Crassostrea virginica Gmelin (eastern oyster) recruitment on constructed reefs and adjacent natural oyster bars over decadal time scales. Northeastern Naturalist 19(4):627-646.
Hare, M., S.K. Allen Jr., P. Bloomer, M.D. Camara, R.B. Carnegie, J. Murfree, M. Luckenbach, D. Meritt, C. Morrison, K.T. Paynter, K.S. Reece, and C. Rose. 2006. A genetic test for recruitment enhancement in Chesapeake Bay oysters, Crassostrea virginica, after population supplementation with a disease tolerant strain. Conservation and Genetics Resources 7:717-734.
Hargis, W.J., Jr., and D.S. Haven. 1999. Chesapeake oyster reefs, their importance, destruction, and guidelines for restoring them. Pp. 329-358 in Oyster Reef Habitat Restoration: A Synopsis and Synthesis of Approaches. M.W. Luckenbach, R. Mann, and J.A. Wesson, eds. Gloucester Point, VA: Virginia Institute of Marine Science.
Hart, L.B., D.S. Rotstein, R.S. Wells, J. Allen, A. Barleycorn, B.C. Balmer, S.M. Lane, T. Speakman, E.S. Zolman, M. Stolen, W. McFee, T. Goldstein, T.K. Rowles, and L.H. Schwacke. 2012. Skin lesions on common bottlenose dolphins (Tursiops truncatus) from three sites in the Northwest Atlantic, USA. PLOS One 7(3):e33081.
Harwell M.A., J.H. Gentile, L.D. McKinney, and J.W. Tunnell. 2015. A New Framework for the Gulf of Mexico EcoHealth Metrics. Corpus Christi, TX: Harte Research Institute for Gulf of Mexico Studies, Texas A&M University. http://www.harteresearchinstitute.org/images/press_releases/Gulf_EcoHealth_Metrics_brochure_3.1_FINAL.pdf.
Havens, K., M. Allen, E. Camp, T. Irani, A. Lindsey, J. G. Morris, A. Kane, D. Kimbro, S. Otwell, B. Pine, and C. Walters. 2013. Apalachicola Bay oyster situation report. Technical Publication 201. Gainesville, FL: University of Florida Sea Grant.
Havens, K.E., R.M. Pinto-Coelho, M. Beklioflu, K.S. Christoffersen, E. Jeppesen, T.L. Lauridsen, A. Mazumder, G. Methot, B. Pinel-Alloul, U.N. Tavsonoglu, S. Erdogan, and J. Vijverberg. 2015. Temperature effects on body size of freshwater crustacean zooplankton from Greenland to the tropics. Hydrobiologia 743:27-25.
Hernandez-Cruz, L.R., S. Purkis, and B. Riegl. 2006. Documenting decadal spatial changes in seagrass and Acropora palmata cover by
aerial photography analysis in Vieques, Puerto Rico: 1937-2000. Bulletin of Marine Science 79(2):401-414.
Hess, N.A., and C.A. Ribic. 2000. Seabird ecology. Chapter 8. In Cetaceans, Sea Turtles and Seabirds in the Northern Gulf of Mexico: Distribution, Abundance and Habitat Associations. Vol. II: Technical Report OCS Study MMS 2000-003. Davis, R.W., W.E. Evans, and B. Würsig, eds. Washington, DC: Bureau of Ocean Energy Management.
Hiers, J.K., R.J. Mitchell, A. Barnett, J.R. Walters, M. Mack, B. Williams, and R. Sutter. 2012. The dynamic reference concept: Measuring restoration success in a rapidly changing no-analogue uture. Ecological Restoration 30:27-36.
Hijuelos, A.C., and D.J. Reed. 2013. An Approach to Identifying Environmental and Socio-Economic Performance Measures for Coastal Louisiana. Produced for and funded by the CPRA under Task Order 9, Contract No. 2503-12-58. Baton Rouge, LA: The Water Institute of the Gulf.
Hijuelos, A.C., and S.A. Hemmerling. 2015. Coastwide and Barataria Basin Monitoring Plans for Louisiana’s System-Wide Assessment and Monitoring Program (SWAMP). Prepared for and funded by the Coastal Protection and Restoration Authority (CPRA) under Task Order 6, Contract No. 2503-12-58. Baton Rouge, LA: Water Institute of the Gulf.
Hijuelos, A.C., B. Yuill, and D.J. Reed. 2013. System-Wide Assessment and Monitoring Program (SWAMP) Framework. Prepared for and funded by the Coastal Protection and Restoration Authority (CPRA) under Task Order 6, Contract No. 2503-12-58. Baton Rouge, LA: Water Institute of the Gulf.
Hill, D., M.Fasham, G. Tucker, M. Shewry, and P. Shaw. 2005. Handbook of Biodiversity Methods, Survey, Evaluation and Monitoring. Cambridge, UK: Cambridge University Press.
Hobbs, R.J., 2007. Setting effective and realistic restoration goals: Key directions for research. Restoration Ecology 15:354-57.
Holling, C.S., ed. 1978. Adaptive assessment and management. Hoboken, NJ: John Wiley and Sons.
Holman, R. and M.C. Haller, 2013. Remote sensing of the nearshore. Annual Review of Marine Science 5:95-113.
Houde, E. D. 2008. Emerging from Hjort’s shadow. Journal of Northwest Atlantic Fishery Science 41:53-70.
Hulme, P.E. 2014. Bridging the knowing-doing gap: Know-who, know-what, know-why, know-how and know-when. Journal of Applied Ecology 51:1131-1136.
Hurlbert, S H. 1984. Pseudoreplication and the design of ecological field experiments. Ecological Monographs 84: 187-211.
Hutto, R.L. and Belote, R.T. 2013. Distinguishing four types of monitoring based on the questions they address. Forest Ecology and Management 289:183-189.
Ikin, K., A. Tulloch, P. Gibbons, D. Ansell, J. Seddon, and D. Lindenmayer. 2016. Evaluating complementary networks of restoration plantings for landscape‐scale occurrence of temporally dynamic species. Conservation Biology. ePub ahead of print 10 May 2016.
Johnson, C.J., and M.H. St-Laurent. 2011. Unifying framework for understanding impacts of human developments on wildlife. Pp. 27-54 in Energy Development and Wildlife Conservation in Western North America. David E. Naugle, ed. Washington, DC: Island Press/Center for Resource Economics.
Johnson, D. 1999. The insignificance of statistical significance testing. Journal of Wildlife Management 63(3):763-772.
Johnson, G.E., H.L. Diefenderfer, R.M. Thom, G.C. Roegner, B.D. Ebberts, J.R. Skalski, A.B. Borde, E.M. Dawley, A.M. Coleman, D.L. Woodruff, S.A. Breithaupt, A.S. Cameron, C.A. Corbett, E.E. Donley, D.A. Jay, Y. Ke, K.E. Leffler, C.B. McNeil, C.A. Studebaker, and J.D. Tagestad. 2012. Evaluation of Cumulative Ecosystem Response to Restoration Projects in the Lower Columbia River and Estuary, 2010. Final Report, U.S. Army Corps of Engineers, Portland District under a Government Order with the U.S. Department of Energy Contract DE-AC0576RL01830. Richland, WA: Pacific Northwest National Laboratory.
Jones-Farrand, D.T., T.M. Tirpak, F.R. Thompson, D.J. Twedt, C.K. Baxter, J.A. Fitzgerald, and B. William III. 2009. A decision support tool for setting population objectives for priority landbirds in the Central Hardwoods and West Gulf Coastal Plain/Quachitas Bird Conservation Regions. Pp. 377-387 in Proceedings of the Fourth International Partners in Flight Conference: Tundra to Tropics.
Jorgensen, D., C. Nilsson, A.R. Hof, E.M. Hasselquist, S. Baker, F.S. Chapin III, K. Eckerberg, J. Hjalten, L. Polvi, and L.A. Meyerson. 2014. Policy language in restoration ecology. Restoration Ecology 22:1-4.
Kapos, V., A. Manica, R. Aveling, P. Bubb, P. Carey, A. Entwistle, J. Hopkins, T. Mulliken, R. Safford, A. Stattersfield, M.J. Walpole, And A. Balmford. 2010 Defining and measuring success in conservation. Pp. 73-94 in TradeOffs in Conservation: Deciding What to Save. N. Leader-Williams, W.M. Adams, and R.J. Smith, eds. Hoboken, NJ: Wiley-Blackwell.
Keeney, R.L. and R.S. Gregory. 2005. Selecting attributes to measure the achievement of objectives. Operations Research 53(1):1-11.
Kelble, C.R., D.K. Loomis, S. Lovelace, W.K. Nuttle, P.B. Ortner, P. Fletcher, G.S. Cook, J.L. Lorenz, and J.N. Boyer. 2013. The EBMDPSER conceptual model: Integrating ecosystem services into the DPSIR framework. PLoS One 8(8):e70766.
Kennedy, V.S. and L.P. Sanford, 1999. Characteristics of relatively unexploited beds of the eastern oyster, Crassostrea virginica, and early restoration programs. Pages 25-46 in Oyster reef habitat restoration: A synopsis and synthesis of approaches. M.W. Luckenbach, R. Mann, and J.A. Wesson, eds. Gloucester Point, VA: Virginia Institute of Marine Science Press.
Kennedy, V.S., D.L. Breitburg, M.C. Christman, M.W. Luckenbach, K. Paynter, J. Kramer, K.G. Sellner, J. Dew-Baxter, C. Keller, and R. Mann. 2011. Lessons learned from efforts to restore oyster populations in Maryland and Virginia, 1990 to 2007. Journal of Shellfish Research 30:719-731.
Kentula, M.E., R.P. Brooks, S.E. Gwin, C.C. Holland, and A.D. Sherman. 1992. An approach to improving decision making in wetland restoration and creation (No. PB-92-217306/XAB; EPA--600/R-92/150). A.J. Hairston, ed. Corvallis, OR: U.S. Environmental Protection Agency, Environmental Research Laboratory.
Kleijn, D. and W.J. Sutherland. 2003. How effective are European agri-environment schemes in conserving and promoting biodiversity? Journal of Applied Ecology 40:947-969.
Klemas, V., 2013. Using remote sensing to select and monitor wetland restoration sites: An overview. Journal of Coastal Research 29:958-970.
Kondolf, G.M., S. Anderson, R. Lave, L. Pagano, A. Merenlender, and E.S. Bernhardt. 2007. Two decades of river restoration in California: What can we learn? Restoration Ecology 15(3):516-523.
Konisky, R.A., D.M. Burdick, M. Dionne, and H.A. Neckles. 2006. A regional assessment of salt marsh restoration and monitoring in the Gulf of Maine. Restoration Ecology 14:516-525.
Koontz, T.M. 2002. Federalism in the forest: National versus state natural resource policy. Washington, DC: Georgetown University Press.
Koricheva, J., J. Gurevitch, K.L. Mengersen. 2013. Handbook of meta-analysis in ecology and evolution. Princeton, NJ: Princeton University Press.
Krausman, P.R., and L.K. Harris, eds. 2011. Cumulative effects in wildlife management: Impact mitigation. Boca Raton, FL: CRC Press.
Krebs, C.J. 2009. Ecology: The Experimental Analysis of Distribution and Abundance. 6th ed. San Francisco, CA: Benjamin Cummings.
Kusler, J. and M. Kentula. 1990. Wetland Creation and Restoration: The Status of the Science, Volume 1. Washington, DC: Island Press.
La Peyre, M.K., J.N. Furlong, L.A. Brown, B.P. Piazza, and K. Brown. 2014. Oyster reef restoration in the northern Gulf of Mexico: Extent, methods and outcomes. Ocean and Coastal Management 89:20-28.
La Peyre, M.K., K. Serra, T.A. Joyner, and A. Humphries, 2015. Assessing shoreline exposure and oyster habitat suitability maximizes potential success for sustainable shoreline protection using restored oyster reefs. PeerJ e1317. doi: 10.7717/peerj.1317.
Le Bris, A., P. Rosa, A. Lerouxel, B. Cognie, P. Gernez, P. Launeau, M. Robin, and L. Barill. 2016. Hyperspectral remote sensing of wild oyster reefs. Estuarine, Coastal, and Shelf Science 172:1-12.
Lecours, V., R. Devillers, D.C. Schneider, V.L. Lucieer, C.J. Brown, and E.N. Edinger. 2015. Spatial scale and geographic context in benthic habitat mapping: review and future directions. Marine Ecology Progress Series 535:259-284.
Leifer, I., W.J. Lehr, D. Simecek-Beatty, E. Bradley, R. Clark, P. Dennison, Y. Hu, S. Matheson, C.E. Jones, B. Holt, M. Reif, D.A. Roberts, J. Svejkovsky, G. Swayze, and J. Wozencraft. 2012. State of the art satellite and airborne marine oil spill remote sensing: Application to the BP Deepwater Horizon oil spill. Remote Sensing of Environment 124:185-209.
Lenihan, H.S. 1999. Physical-biological coupling on oyster reefs: how habitat structure influences individual performance. Ecological Monographs 69:251-275.
Levin, P., M.J. Fogarty, S. Murawski, D. Fluharty. 2009. Integrated Ecosystem Assessments:
Developing the Scientific Basis for Ecosystem-Based Management of the Oceans. PLoS Biology 7(1):e1000014.
Lindenmayer, D.B. and G.E. Likens. 2009. Adaptive monitoring: A new paradigm for long-term research and monitoring. Trends in Ecology and Evolution 24(9):482-486.
Lindenmayer, D.B. and G.E. Likens. 2010. The science and application of ecological monitoring. Biological Conservation 143:1317-1328.
Lipcius, R.N., R.P. Burke, D.N. McCulloch, S.J. Schreiber, D.M. Schulte, R.D. Seitz, and J. Shen. 2015. Overcoming restoration paradigms: value of the historical record and metapopulation dynamics in native oyster restoration. Frontiers in Marine Science 2:65.
Lirman, D. and M.W. Miller. 2003. Modeling and Monitoring Tools to Assess Recovery Status and Convergence Rates between Restored and Undisturbed Coral Reef Habitats. Restoration Ecology 11:448-456. doi: 10.1046/j.1526-100X.2003.rec0286.x
LoSchiavo, A.J., R.G. Best, R.E. Burns, S. Gray, M.C. Harwell, E.B. Hines, A.R. McLean, T. St. Clair, S. Traxler, and J.W. Vearil. 2013. Lessons learned from the first decade of adaptive management in comprehensive Everglades restoration. Ecology and Society 18(4):70. doi: 10.5751/ES-06065-180470.
Love, M., A. Baldera, C. Robbins, R.B. Spies, and J.R. Allen. 2015. Charting the Gulf: Analyzing the gaps in long-term monitoring of the Gulf of Mexico. New Orleans, LA: Ocean Conservancy. http://www.oceanconservancy.org/places/gulf-of-mexico/gapanalysis/charting-the-gulf-pdf.pdf.
Luckenbach, M.W., R. Mann, and J.A. Wesson, eds. 1999. Oyster Reef Habitat Restoration: A Synopsis and Synthesis of Approaches. Gloucester Point, Virginia: Virginia Institute of Marine Science Press.
Luckenbach, M.W., L.D. Coen, P.G. Ross, Jr., and J.A. Stephen. 2005. Oyster reef habitat restoration: Relationships between oyster abundance and community development based on two studies in Virginia and South Carolina. Journal of Coastal Research Special Issue 40:64-78.
Lukacs, P.M., W.L. Thompson, W.L. Kendall, W.R. Gould, P.F. Doherty, K.P. Burnham, and D.R. Anderson. 2007. Concerns regarding a call for pluralism of information theory and hypothesis testing. Journal of Applied Ecology 44(2):456-460.
Lutcavage, M., P. Plotkin, B. Witherington, and P. Lutz. 1996. Human impacts on sea turtle survival. Pp. 387-409 in The Biology of Sea Turtles. P. Lutz and J. Musick eds. Boca Raton, FL: CRC Press.
Lynch A.J.J., R. Thackway, A. Specht, P,J. Beggs, S. Brisbane, E.L. Burns, M. Byrne, S.J. Capon, M.T. Casanova, P.A. Clarke, J.M. Davies, S. Dovers, E.G. Dwyer, E. Ens, D.O. Fisher, M. Flanigan, E. Garnier, S.M. Guru, K. Kilminster, J. Locke, R. Mac Nally, K.M. McMahon, P.J. Mitchell, J.C. Pierson, E.M. Rodgers, J. Russell-Smith, J. Udy, and MM. Waycott. 2015. Transdisciplinary synthesis for ecosystem science, policy and management: The Australian experience. Science of the Total Environment 534:173-184.
Maccherini, S., E. Santi, and M. Marignani. 2014. Detection of the effects of restoration on community composition in a calcareous grassland: Does scale matter? Grassland Science 60(1)31-35.
MacDonald, I.R., O. Garcia‐Pineda, A. Beet, S. Daneshgar Asl, L. Feng, G. Graettinger, D. French‐McCay, J. Holmes, C. Hu, F. Huffer, and I. Leifer. 2015. Natural and unnatural oil slicks in the Gulf of Mexico. Journal of Geophysical Research: Oceans 120(12).
Manning, A.D., D.B. Lindenmayer, and J. Fischer. 2006. Stretch Goals and Backcasting: Approaches for Overcoming Barriers to Large‐Scale Ecological Restoration. Restoration Ecology 14(4) 487-492.
Margules C.R. and R.L. Pressey. 2000. Systematic conservation planning. Nature 405:243-253.
Martins, M., P.M. Costa, J. Raimundo, C. Vale, A.M. Ferreira, and M.H. Costa. 2012. Impact of remobilized contaminants in Mytilus edulis during dredging operations in a harbour area: Bioaccumulation and biomarker responses. Ecotoxicology and Environmental Safety 85:96-103.
Masi, M.D., C.H. Ainsworth, and D. Chagaris. 2014. A probabilistic representation of fish diet compositions from multiple data sources: A Gulf of Mexico case study. Ecological Modelling 284:60-74.
Mateus, M. and F.J. Campuzano. 2008. The DPSIR framework applied to the integrated management of coastal areas. Pp.29-42 in Perspectives on Integrated coastal zone management in South America. R. Neves, J. Baretta, and M. Mateus, eds. Lisboa, Portugal: 1st Press.
Mazzotti, F.J. and T. Barnes. 2004. Using conceptual models to select ecological indicators for monitoring, restoration, and management of estuarine ecosystems. Pp.
493-501 in Estuarine Indicators. S.A. Bortone, ed. Boca Raton, FL: CRC Press.
Mazzotti, F.J., N. Hughes, and R.G. Harvey. 2007. Why do we need environmental monitoring for Everglades restoration? IFAS Publication Number WEC-241. Gainesville, FL: Institute of Food and Agricultural Sciences, University of Florida. http://edis.ifas.ufl.edu/pdffiles/UW/UW28300.pdf.
McKay, S.K., I. Linkov, J.C. Fischenich, S.J. Miller, and L.J. Valverde. 2012. Ecosystem Restoration Objectives and Metrics. EMRRPEBA-16. Vicksburg, MS: USACE Engineer Research and Development Center, Ecosystem Management and Restoration Research Program.
McManus, L.C., Yurek, S., Teare, P.B., Dolan, T.E. and Serafy, J.E. 2014. Killifish habitat suitability as a measure of coastal restoration performance: Integrating field data, behavioral trials and simulation. Ecological Indicators 44:173-181.
MEA (Millennium Ecosystem Assessment). 2005. Ecosystems and human well-being: Synthesis. Washington, DC: Island Press.
Meager, J.J. and C. Limpus. 2014. Mortality of inshore marine mammals in eastern Australia is predicted by freshwater discharge and air temperature. PLoS ONE 9(4):e94849. doi:10.1371/journal.pone.0094849.
Mebane, C.A., R.J. Eakins, B.G. Fraser, and W.J. Adams. 2015. Recovery of a mining-damaged stream ecosystem. Elementa: Science of the Anthropocene. 3:000042.
Meselhe, E., D.J. Reed, A.O. Grace. 2015. 2017 Coastal Master Plan: Appendix C: Modeling. Version I. (p. 99). Baton Rouge, LA: Coastal Protection and Restoration Authority.
Michener, W.K. 1997. Quantitatively evaluating restoration experiments: Research design, statistical analysis, and data management considerations. Restoration Ecology 5:324-337. doi: 10.1046/j.1526-100X.1997.00546.x.
Michener, W.K. 2006. Meta-information concepts for ecological data management. Ecological informatics 1(1):3-7.
Michener W.K. and M.B. Jones. 2012. Ecoinformatics: Supporting ecology as a data-intensive science. Trends in Ecology and Evolution 27:85-93.
Mitsch, W.J. 2014. When will ecologists learn engineering and engineers learn ecology? Ecological Engineering 65:9-14.
Montagna, P.A., T.A. Palmer, and J.B. Pollack. 2013. Conceptual model of estuary ecosystems. Pp. 5-21 in Hydrological Changes and Estuarine Dynamics. New York: Springer.
Moreno-Mateos, D., M.E. Power, F.A. Comin, and R. Yockteng. 2012. Structural and functional loss in restored wetland ecosystems. PLOS Biology. doi: 10.1371/journal.pbio.1001247.
Moore, J.L. and M.C. Runge. 2012. Combining structured decision making and value‐of-information analyses to identify robust management strategies. Conservation Biology 26(5):810-820.
Moore, T.S., K.M. Mullaugh, R.R. Holyoke, A.S. Madison, M. Yucel, and G.W. Luther, III. 2009. Marine chemical technology and sensors for marine waters: Potentials and limits. Annual Review of Marine Science 1:91-115.
Morris, J.T., D. Porter, M. Neet, P.A. Noble, L. Schmidt, L.A. Lapinee, and J.R. Jensen. 2005. Integrating LIDAR elevation data, multispectral imagery and neural network modelling for marsh characterization. International Journal of Remote Sensing 26: 5221-5234.
Morrison, M.L., B.G. Marcot, and R.W. Mannan. 2006. Wildlife-Habitat Relationships: Concepts and Applications. Washington, DC: Island Press.
Mudelsee, M. 2014. Climate Time Series Analysis: Classical Statistical and Bootstrap Methods. Second edition. Cham, Switzerland: Springer International Publishing.
Mullin, K.D., K. Barry, C. Sinclair, J. Litz, K. Maze-Foley, E. Fougeres, B. Mase-Guthrie, R. Ewing, A. Gorgone, J. Adams, and M. Tumlin. 2015. Common bottlenose dolphins (Tursiops truncatus) in Lake Pontchartrain, Louisiana: 2007 to mid-2014. NOAA Technical Memorandum NMFS-SEFSC-673. Pascagoula, MS: National Oceanic and Atmospheric Administration/National Marine Fisheries Service/Southeast Fisheries Science Center. http://docs.lib.noaa.gov/noaa_documents/NMFS/SEFSC/TM_NMFS_SEFSC/NMFS_SEFSC_TM_673.pdf.
Nair, S.S., B.L. Preston, A.W. King, and R. Mei. 2016. Using landscape typologies to model socioecological systems: Application to agriculture of the United States Gulf Coast. Environmental Modelling and Software 79:85-95.
Neckles, H.A., G.R. Guntenspergen, W.G. Shriver, N.P. Danz, W.A. Wiest, J.L. Nagel, and J.H. Olker. 2013. Identification of Metrics to Monitor Salt Marsh Integrity on National Wildlife Refuges In Relation to Conservation and Management Objectives. Final Report to U.S. Fish and Wildlife Service, Northeast
Region. Laurel, MD: US Geological Survey Patuxent Wildlife Research Center. 226 pp.
Neckles, H.A., J.E. Lyons, G.R. Guntenspergen, W.G. Shriver, and S.C. Adamowicz. 2015. Use of structured decision making to identify monitoring variables and management priorities for salt marsh ecosystems. Estuaries and Coasts 38(4):1215-1232.
Neckles, H.A., M. Dionne, D.M. Burdick, C.T. Roman, R. Buchsbaum, and E. Hutchins. 2002. A monitoring protocol to assess tidal restoration of salt marshes on local and regional scales. Restoration Ecology 10:556-563.
Newbold, S.C. 2005. A combined hydrologic simulation and landscape design model to prioritize sites for wetlands restoration. Environmental Modeling and Assessment 10.3: 251-263.
Nichols, J.D. and B.K. Williams. 2006. Monitoring for conservation. Trends in Ecology and Evolution 21(12):668-673.
Nilsson, C., A.L. Aradottir, D. Hagen, G. Halldórsson, K. Høegh, R.J. Mitchell, K. Raulund-Rasmussen, K. Svavarsdóttir, A. Tolvanen, and S.D. Wilson. 2016. Evaluating the process of ecological restoration. Ecology and Society 21(1):41.
Nixon, Z., S. Zengel, M. Baker, M. Steinhoff, G. Fricano, S. Rouhani, and J. Michel. 2016. Shoreline oiling from the Deepwater Horizon oil spill. Marine Pollution Bulletin. In Press. doi:10.1016/j.marpolbul.2016.04.003.
NMFS (National Marine Fisheries Service), U.S. Fish and Wildlife Service, and SEMARNAT. 2011. Bi-National Recovery Plan for the Kemp’s Ridley Sea Turtle (Lepidochelys kempii). Second Revision. Silver Spring, MD: NOAA/NMFS.
NOAA (National Oceanic and Atmospheric Administration). 2015. Osprey Restoration in Coastal Alabama. Phase IV Proposed Early Restoration Project. Silver Spring, MD: NOAA. http://www.gulfspillrestoration.noaa.gov/sites/default/files/wp-content/uploads/Alabama-Osprey-Fact-Sheet-5-19-15.pdf.
NOAA Restoration Center and Coastal Services Center. 2010. Goals and objectives. Chapter 3 in Returning the Tide. A Tidal Hydrology Restoration Guidance Manual for the Southeastern U.S. Silver Spring, MD: NOAA. http://www.habitat.noaa.gov/toolkits/tidal_hydro.html.
NOAA Ecosystem Science and Management Working Group of the Science Advisory Board. 2014. Restoration of Coastal Habitats: An Evaluation of NOAA’s Current and Potential Role. Silver Spring, MD: NOAA. ftp://ftp.oar.noaa.gov/SAB/sab/Meetings/2014/april/NOAA%20Restoration%20Review%20Findings%20%20Recommendations%20Final%20041714.pdf.
Nowacek, S.M., R.S. Wells, and A.R. Solow. 2001. Short-term effects of boat traffic on bottlenose dolphins, Tursiops truncatus, in Sarasota Bay, Florida. Marine Mammal Science 17(4):673-688.
Nowacek, S.M., R.S. Wells, D.P. Nowacek, E.C.G. Owen, T.R. Speakman, and R.O. Flamm. 2004. Florida manatees, Trichechus manatus latirostris, respond to approaching vessels. Biological Conservation 119:517-523.
NRC (National Research Council). 1990. Decline of the Sea Turtles: Causes and Prevention. Washington, DC: National Academy Press.
NRC. 1992. Restoration of Aquatic Ecosystems: Science, Technology, and the Public. Washington, DC: National Academy Press.
NRC. 1994. Restoring and Protecting Marine Habitat: The role of Engineering and Technology. Washington, DC: National Academy Press.
NRC. 2001. Compensating for Wetland Losses under the Clean Water Act. Washington, DC: National Academy Press.
NRC. 2003a. Adaptive Monitoring and Assessment for the Comprehensive Everglades Restoration Plan. Washington, DC: The National Academies Press.
NRC. 2003b. Cumulative Environmental Effects of Oil and Gas Activities on Alaska’s North Slope. Washington, DC: The National Academies Press.
NRC. 2004. Nonnative Oysters in the Chesapeake Bay. Washington, DC: The National Academies Press.
NRC. 2005. Valuing Ecosystem Services: Toward Better Environmental Decision-Making. Washington, DC: The National Academies Press.
NRC. 2007. Environmental Data Management at NOAA. Washington, DC: The National Academies Press.
NRC. 2012. Approaches for Ecosystem Services Valuation for the Gulf of Mexico after the Deepwater Horizon Oil Spill. Washington, DC: The National Academies Press.
NRC. 2013. An Ecosystem Services Approach to Assessing the Impacts of the Deepwater Horizon Oil Spill in the Gulf of Mexico. Washington, DC: The National Academies Press.
NRC. 2014. Progress Toward Restoring the Everglades: The Fifth Biennial Review, 2014.
Washington, DC: The National Academies Press.
NRC. 2015. Enhancing the Effectiveness of Team Science. Washington, DC: The National Academies Press.
Nyberg, J.B. 1998. Statistics and the practice of adaptive management. Pp. 1-8 in Statistical Methods for Adaptive Management Studies. V. Sit and B. Taylor, eds. Victoria, British Coloumbia: Ministry of Forests, Forestry Division Services Branch.
Nyman, J.A., D.M. Baltz, M.D. Kaller, P.L. Leberg, C. Parsons Richards, R.P. Romaire, and T.M. Soniat. 2013. Likely changes in habitat quality for fish and wildlife in coastal Louisiana during the next 50 years. Journal of Coastal Research 67: 60-74.
Ogden J.C., S.M. Davis, K.J. Jacobs, T. Barnes, and H.E. Fling. 2005. The use of conceptual ecological models to guide ecosystem restoration in South Florida. Wetlands 25:795-809.
Olander, L., R.J. Johnston, H. Tallis, J. Kagan, L. Maguire, S. Polasky, D. Urban, J. Boyd, L. Wainger, and M. Palmer. 2015. Best Practices for Integrating Ecosystem Services into Federal Decision Making. Durham, NC: National Ecosystem Services Partnership, Duke University. doi:10.13016/M2CH07.
Olden, J.D., J.J. Lawler, and N.L. Poff. 2008. Machine Learning Methods Without Tears: A Primer for Ecologists. Quarterly Review of Biology 83:171-193.
Orth, R.J., M. Luckenbach, and K.A. Moore. 1994. Seed dispersal in a marine macrophyte: Implications for colonization and restoration. Ecology 75:1927-1939. doi:10.2307/19415 97.
OSPAR Commission. 2009. Assessment of the impact of coastal defence structures. Publication Number: 435/2009. London: OSPAR Commission. http://qsr2010.ospar.org/media/assessments/p00435_Coastal_defence.pdf.
Ozesmi, S.L., and M.E. Bauer. 2002. Satellite remote sensing of wetlands. Wetlands Ecology and Management 10:381-402.
Palmer, M. 2009. Reforming watershed restoration: science in need of application and application in need of science. Estuaries and Coasts. doi: 10.1007/s12237-008-9129-5.
Palmer, M.A., and L. Wainger. 2011. Promoting successful restoration through effective monitoring in the Chesapeake Bay Watershed. Washington, DC: National Fish and Wildlife Federation.
Palmer, M.A., E.S. Bernhardt, J.D. Allan, P.S. Lake, G. Alexander, S. Brooks, J. Carr, S. Clayton, C.N. Dahm, J. Follstad Shah, D.L. Galat, S.G. Loss, P. Goodwin, D.D. Hart, B. Hassett, R. Jenkinson, G.M. Kondolf, R. Lave, J.L. Meyer, T.K. O’Donnell, L. Pagano, and E. Sudduth. 2005. Standards for ecologically successful river restoration. Journal of Applied Ecology 42:208-217.
Palmer, M., J.D. Allan, J. Meyer, and E.S. Bernhardt. 2007. River restoration in the twenty‐first century: Data and experiential knowledge to inform future efforts. Restoration Ecology 15(3):472-481.
Palmer, M.A., L. Wainger, L. Craig, C. Febria, J. Hosen, and K. Politano. 2011. Promoting successful restoration through effective monitoring in the Chesapeake Bay watershed: Non-tidal wetlands. Washington, DC: National Fish and Wildlife Foundation. http://www.palmerlab.umd.edu/Publications/palmer_NFWF_NonTidalWetlands.pdf.
Palmer, M.A., K.L. Hondula, and B.J. Koch. 2014. Ecological restoration of streams and rivers: Shifting strategies and shifting goals. Annual Review of Ecology, Evolution, and Systematics 45:247-69.
Palmer, M.E., W. Keller, and N.D. Yan. 2013. Gauging recovery of zooplankton from historical acid and metal contamination: The influence of temporal changes in restoration targets. Journal of Applied Ecology 50(1):107-118.
Palumbi, S. R., P.A., Sandifer, J.D. Allan, M.W. Beck, D.G. Fautin, M.J. Fogarty, B.S. Halpern, L.S. Incze, J.-A. Leong, E. Norse, J.J. Stachowicz, and D.H. Wall. 2009. Managing for ocean biodiversity to sustain marine ecosystem services. Frontiers in Ecology and the Environment 7: 204-211.
Paulsen, C.M. 1995. Information System Development for a Cost-Effective Monitoring Program: A Workplan from Resources for the Future. Portland, OR: Division of Fish and Wildlife, Office of Power Sales, Bonneville Power Administration.
Peck, S.L. 2004. Simulation as experiment: A philosophical reassessment for biological modeling. Trends in Ecology and Evolution 19(10):530-534.
Perillo, G.M., E. Wolanski, D.R. Cahoon, and M.M. Brinson, eds. 2009. Coastal Wetlands: An Integrated Ecosystem Approach. Amsterdam: Elsevier.
Perring, M.P., R.J. Standish, J.N. Price, M.D. Craig, T.E. Erickson, K.X. Ruthrof, A.S. Whiteley, L.E. Valentine, and R.J. Hobbs. 2015. Advances in restoration ecology: Rising to the challenges of the coming decades. Ecosphere 6(8):1-25.
Peterson, C.H., J.H. Grabowski, and S.P. Powers. 2003. Estimated enhancement of fish production resulting from restoring oyster reef habitat: quantitative valuation. Marine Ecology Progress Series 264:251-256.
Pettorelli, N., K. Safi, and W. Turner. 2014. Satellite remote sensing, biodiversity research and conservation of the future. Philosophical Transactions of the Royal Society B 369:20130190. doi: 10.1098/rstb.2013.0190.
Petts, J. 2006. Managing public engagement to optimize learning: Reflections from urban river restoration. Human Ecology Review 13(2):172.
Peyronnin, N. M. Green, C.P. Richards, A. Owens, D. Reed, J. Chamberlain, D.G. Groves, W.K. Rhinehart, and K. Belhadjali. 2013. Louisiana’s 2012 Coastal Master Plan: overview of a science-based and publicly informed decision-making process. Journal of Coastal Research 67:1-15.
Pine, W. E., III, C. J. Walters, E. V. Camp, R. Bouchillon, R. Ahrens, L. Sturmer, and M. Berrigan. 2015. The curious case of eastern oyster Crassostrea virginica stock status in Apalachicola Bay, Florida. Ecology and Society 20(3):46. doi: 10.5751/ES-07827-200346
Piwowar, H.A., R.S. Day, and D.B. Fridsma. 2007. Sharing detailed research data is associated with increased citation rate. PLoS ONE 2(3):e308. doi:10.1371/journal.pone.0000308.
Plotkin, P.T., M.K. Wicksten, and A.F. Amos. 1993. Feeding ecology of the loggerhead sea turtle Caretta caretta in the northwestern Gulf of Mexico. Marine Biology 115:1-5.
Pollock, M.M., J.M. Wheaton, N. Bouwes, C. Volk, N. Weber, and C.E. Jordan. 2012. Working with beaver to restore salmon habitat in the Bridge Creek intensively monitored watershed: Design rationale and hypotheses. NOAA Technical Memorandum NMFS–NWFSC–120. Silver Spring, MD: NOAA.
Powell, E.N., J. Song, M.S. Ellis, and E.A. WilsonOrmond. 1995. The status and long-term trends of oyster reefs in Galveston Bay, Texas. Journal of Shellfish Research 14:439-457.
Powell, E.N., J.M. Klinck, K.A. Alcox, E.E. Hoffmann, and J.M. Morson. 2012. The rise and fall of Crassostrea virginica oyster reefs: The role of disease and fishing in their demise and a vignette on their recovery. Journal of Marine Research 70: 505-558.
Powers, S.P. and K.E. Boyer. 2014. Marine restoration ecology. Pp. 495-516 in Marine Community Ecology and Conservation. M.D. Bertness, J.F. Bruno, B.R. Silliman, and J.J. Stachowicz, eds. Sunderland, MA: Sinauer Associates.
PRRIP (Platte River Recovery Implementation Program). 2015. 2014 State of the Platte Report. Kearney, NE: PRRIP Program Office.
Puckett, B.J. and D.B. Eggleston. 2012. Oyster demographics in a network of no-take reserves: Recruitment, growth, survival, and density dependence. Marine and Coastal Fisheries: Dynamics, Management, and Ecosystem Science 4:1:605-627.
Rabalais, N. 2014. Assessing early looks at biological responses to the Macondo event. Bioscience 64: 757-759.
Ragone Calvo, L.M., G.W. Calvo, and E.M. Burreson. 2003. Dual disease resistance in a selectively bred eastern oyster, Crassostrea virginica, strain tested in Chesapeake Bay. Aquaculture 220:69-87.
Ramseur, J. L. 2015. Gulf Coast Restoration: RESTORE Act and Related Efforts. Report R42942. Washington, DC: Congressional Research Service. https://www.fas.org/sgp/crs/misc/R42942.pdf.
RECOVER (Restoration Coordination and Verification). 2010. CERP Adaptive Management Integration Guide. Jacksonville, FL: U.S. Army Corps of Engineers. http://184.108.40.206/pm/pm_docs/adaptive_mgmt/062811_am_guide_final.pdf.
RECOVER. 2015. Program-level Adaptive Management Plan. Jacksonville, FL: U.S. Army Corps of Engineers. http://www.saj.usace.army.mil/Portals/44/docs/Environmental/RECOVER/20151019_CERPPROGRAMAMPLAN_DCT_APPROVED.pdf.
Reichman, O.J., M.B. Jones, and M.P. Schildhauer. 2011. Challenges and opportunities of open data in ecology. Science 331:(6018) 703-705. doi:10.1126/science.1197962.
RESTORE (Resources and Ecosystems Sustainability, Tourist Opportunities, and Revived Economies of the Gulf Coast States) Council. 2013. Draft Initial Comprehensive Plan: Restoring the Gulf Coast’s Ecosystem and Economy. New Orleans, LA: Gulf Coast Ecosystem Restoration Council. http://www.restorethegulf.gov/sites/default/files/Gulf%20Restoration%20Council%20Draft%20Initial%20Comprehensive%20Plan%205.23.15.pdf.
RESTORE Council. 2015. Initial Funded Priorities List. New Orleans, LA: Gulf Coast Ecosystem Restoration Council. https://restorethegulf.gov/council-selected-restoration-component/funded-priorities-list.
Ribic, C.A., D.G. Ainley, and L.B. Spear. 1997. Scale-related seabird-environmental relation-
ships in Pacific equatorial waters, with reference to El Niño-Southern Oscillation events. Marine Ecology Progress Series 156:183-203.
Riegel, J.B., E. Bernhardt, and J. Swenson. 2013. Estimating above-ground carbon biomass in a newly restored coastal plain wetland using remote sensing. PLoS ONE 8(6):e68251. doi:10.1371/journal.pone.0068251\\.
Riegl, B., R.P. Moyer, L. Morris, R. Virnstein, and R.E. Dodge. 2005a. Determination of the distribution of shallow-water sea grass and drift algae communities with acoustic seafloor discrimination. Revista de Biologia Tropical 53 (Suppl. 1):165-174.
Riegl, B., R.P. Moyer, L. Morris, R. Virnstein, and S.J. Purkis. 2005b. Distribution and seasonal biomass of drift macroalgae in the Indian River Lagoon (Florida, USA) estimated with acoustic seafloor classification (QTCView, Echoplus). Journal of Experimental Marine Biology and Ecology 326:89-104.
RLG (Research Libraries Group). 2002. Trusted Digital Repositories: Attributes and Responsibilities. An RLG-OCLC Report. Mountain View, CA: RLG.
Roegner, G.C. and R. Mann. 1995. Early recruitment and growth of the American oyster Crassostrea virginica (Bivalvia: Ostreidae) with respect to tidal zonation and season. Marine Ecology Progress Series 117:91-101.
Roloff, G.J. and B.J. Kernohan. 1999. Evaluating reliability of habitat suitability index models. Wildlife Society Bulletin 973-985.
Roman, C. T. and D. M. Burdick, editors. 2012. Tidal marsh restoration: A synthesis of science and management. Washington, DC: Island Press.
Roni, P., M.C. Liermann, C. Jordan, and E.A. Steel. 2005. Steps for designing a monitoring and evaluation program for aquatic restoration. Pp. 13-34 in Monitoring Stream and Watershed Restoration. P. Roni, ed. Bethesda, MD: American Fisheries Society.
Rose, K.A., J.H. Cowan, K.O. Winemiller, R.A. Myers, and R. Hilborn. 2001. Compensatory density dependence in fish populations: Importance, controversy, understanding and prognosis. Fish and Fisheries 2(4): 293-327.
Rose, K.A., S. Sable, D.L. DeAngelis, S. Yurek, J.C. Trexler, W. Graf, and D.J. Reed. 2015. Proposed best modeling practices for assessing the effects of ecosystem restoration on fish. Ecological Modelling 300:12-29.
Rose, R.A., D. Byler, J.R. Eastman, E. Fleishman, G. Geller, S. Goetz, L. Guild, H. Hamilton, M. Hansen, R. Headley, J. Hewson, N. Horning, B.A. Kaplin, N. Laporte, A. Leidner, P. Leimgruber, J. Morisette, J. Musinsky, L. Pintea, A. Prados, V.C. Radeloff, M. Rowen, S. Saatchi, S. Schill, K. Tabor, W. Turner, A. Vodacek, J. Vogelmann, M. Wegmann, D. Wilkie, and C. Wilson. 2015. Ten ways remote sensing can contribute to conservation. Conservation Biology 29:350-359.
Rothschild, B.J., J.S. Ault, P. Goulletquer, and M. Heral. 1994. Decline of the Chesapeake Bay oyster population: A century of habitat destruction and overfishing. Marine Ecology Progress Series 111:29-39.
Ruiz-Jaen, M.C., and T.M. Aide. 2005. Restoration success: How is it being measured? Restoration Ecology 13:569-577.
Rumpff, L., D.H. Duncan, P.A. Vesk, D.A. Keith, D.A. and B.A. Wintle. 2011. State-and-transition modelling for adaptive management of native woodlands. Biological Conservation 144(4):1224-1236.
Sample, V.A., ed. 2013. Remote sensing and GIS in ecosystem management. Washington, DC: Island Press.
SAIC (Science Applications International Corporation). 1996. Use of predictive models in aquatic habitat restoration. Alexandria, VA: U.S. Army Corps of Engineers, Water Resources Support Center, Institute for Water Resources. http://www.iwr.usace.army.mil/Portals/70/docs/iwrreports/96-EL-5.pdf.
Sanderlin, J.S. W.M. Block, and J.L. Ganey. 2014. Optimizing study design for multi-species avian monitoring programmes. Journal of Applied Ecology 51:560-870.
Sanderson, E.W. 2006. How Many Animals Do We Want to Save? The Many Ways of Setting Population Target Levels for Conservation. BioScience 56(11):911-922.
SCDNR (South Carolina Department of Natural Resources). 2008. Final Report for South Carolina’s 2004-05 Intertidal oyster survey and related reef restoration/enhancement program: An integrated oyster resource/habitat management and restoration program using novel approaches. Charleston, SC: Marine Resources Division, SCDNR. http://www.oyster-restoration.org/oysterrestoration-research-reports/.
Scheuerell, M.D., E.R. Buhle, B.X. Semmens, M.J. Ford, T. Cooney, and R.W. Carmichael. 2015. Analyzing large‐scale conservation interventions with Bayesian hierarchical models: a case study of supplementing threatened Pacific salmon. Ecology and Evolution 5(10)2115-2125.
Schirripa, M.J., B. Allee, S. Cross, C. Kelble, and A.R. Parsons. 2013. Progress towards an integrated ecosystem assessment for the Gulf of Mexico. Collective Volume of Scientific Papers, International Commission for the Conservation of Atlantic Tunas 69(4):1867-1875. http://www.iccat.es/Documents/CVSP/CV069_2013/n_4/CV069041867.pdf.
Schlacher, T.A., D.S. Schoeman, A.R. Jones, J.E. Dugan, D.M. Hubbard, O. Defeo, C.H. Peterson, M.A. Weston, B. Maslo, A.D. Olds, F. Scapini, R. Nel, L.R. Harris, S. Lucrezi, M. Lastra, C.M. Huijbers, and R.M. Connolly. 2014. Metrics to assess ecological condition, change, and impacts in sandy beach ecosystems. Journal of Environmental Management 144:322-335.
Schreiber, E.S.G., A. R. Bearlin, S.J. Nicol, and C.R. Todd. 2004. Adaptive management: A synthesis of current understanding and effective application. Ecological Management and Restoration 5(3):177-182.
Schubert, P.R., W. Hukriede, R. Karez, and T.B.H. Reusch. 2015. Mapping and modeling eelgrass Zostera marina distribution in the western Baltic Sea. Marine Ecology Progress Series 522:79-95.
Schulte, D.M., R.P. Burke, and R.N. Lipcius. 2009. Unprecedented restoration of a native oyster metapopulation. Science 325:1124-1128.
Schultz, C. 2010. Challenges in connecting cumulative effects analysis to effective wildlife conservation planning. BioScience 60:545-551.
Schwarz, C.J. 2015. Analysis of BACI experiments. In Course Notes for Beginning and Intermediate Statistics. http://www.stat.sfu.ca/~cschwarz/CourseNotes.
SER (Society for Ecological Restoration International Science and Policy Working Group). 2004. The SER International Primer on Ecological Restoration. Washington, DC: SER. http://www.ser.org/resources/resources-detail-view/ser-international-primer-onecological-restoration.
Shaver, D.J. 1991. Feeding ecology of Kemp’s ridley in South Texas waters. Journal of Herpetology 25:327-334.
Shaw, R.G. and T. Mitchell-Olds. 1993. Anova for Unbalanced Data: An Overview. Ecology 74(6):1638-645.
Sherwood, C.R., D.A. Jay, R.B. Harvey, P. Hamilton, and C.A. Simenstad. 1990. Historical changes in the Columbia River estuary. Progress in Oceanography 25(1-4):299-352.
Short, F.T., D.M. Burdick, C.A. Short, R.C. Davis, and P. Morgan. 2000. Developing success criteria for restored eelgrass, salt marsh and mud flat habitats. Ecological Engineering 15:239-252.
Shreffler, D.K., R.M. Thom, M.J. Scott, K.F. Wellman, and M.A. Walters. 1995. National Review of Non-Corps Environmental Restoration Projects. Alexandria, VA: U.S. Army Corps of Engineers Institute for Water Resources.
Simenstad, C.A. and R.M. Thom 1996. Functional equivalency trajectories of the restored Gog-Le-Hi-Te estuarine wetland. Ecological Applications 6:38-56.
Simenstad, C., M. Logsdon, K. Fresh, H. Shipman, M. Dethier, and J. Newton. 2006. Conceptual model for assessing restoration of Puget Sound nearshore ecosystems. Puget Sound Nearshore Partnership Report No. 2006-03. Seattle: Washington Sea Grant Program, University of Washington. http://www.pugetsoundnearshore.org/technical_papers/conceptual_model.pdf.
Smith, G.F., D.G. Bruce, and E.B. Roach. 2001a. Remote acoustic habitat assessment techniques used to characterize the quality and extent of oyster bottom in the Chesapeake Bay. Marine Geodesy 24:171-189.
Smith, G.F., K.N. Greenhawk, D.G. Bruce, E.B. Roach, and S.J. Jordan. 2001b. A digital presentation of the Maryland oyster habitat and associated bottom types in the Chesapeake Bay (1974-1983). Journal of Shellfish Research 20:197-206.
Smith, M.D. 2006. Cumulative impact assessment under the National Environmental Policy Act: An analysis of recent case law. Environmental Practices 8:228-240.
Soniat, T.M., and M.S. Brody. 1989. Field validation of a habitat suitability index model for the American oyster. Estuaries 11:87-95.
Soniat, T.M., J.M. Klinck, E.N. Powell, and E.E. Hofmann. 2012. Understanding the success and failure of oyster populations: Periodicities of Perkinsus marinus and oyster recruitment, mortality, and size. Journal of Shellfish Research 31:635-646.
Soniat, T.M., C.P. Conzelmann, j.D. Byrd, D.P. Roszell, J.L. Bridevaux, K.J. Suir, and S.B. Colley. 2013. Predicting the Effects of Proposed Mississippi River Diversions on Oyster Habitat Quality; Application of an Oyster Habitat Suitability Index Model. Journal of Shellfish Research 32(3):629-638. doi: 10.2983/035.032.0302.
Soranno P.A., E.G. Bissell, K.S. Cheruvelil, S.T. Christel, S.M. Collins, C.E. Fergus, C.T. Filstrup, J.-F. Lapierre, N.R. Lottig, S.K.
Oliver, C.E. Scott, N.J. Smith, S. Stopyak, S.Yuan, M.-T. Bremigan, J.A. Downing, C. Gries, E.N. Henry, N.K. Skaff, E.H. Stanley, C.A. Stow, P.-N. Tan, T. Wagner, and K.E. Webster . 2015. Building a multi-scaled geospatial temporal ecology database from disparate data sources: fostering open science and data reuse. GigaScience 4.
Speybroeck, J., D. Bonte, W. Courtens, T. Gheskiere, P. Grootaert, J.-P. Maelfait, M. Mathys, S. Provoost, K. Sabbe, E.W.M. Stienen, V. Van Lancker, M. Vincx, and S. Degraer. 2006. Beach nourishment: an ecologically sound coastal defence alternative? A review. Aquatic Conservation: Marine and Freshwater Ecosystems 16:419-435.
Stapanian, M.A., T.E. Lewis, C.J. Palmer, and M.M. Amos. 2015. Assessing accuracy and precision for field and laboratory data: A perspective in ecosystem restoration. Restoration Ecology 24(1):18-26. doi: 10.1111/rec.12284.
Stelk, M., J. Christie, R. Weber, R.R. Lewis, J. Zedler, M. Micacchion, T. Harcarik, L. Cowan, N. Famous, J. Teal, and P. Bostwick. 2016. Wetland Restoration Contemporary Issues and Lessons Learned. Washington, DC: US environmental Protection Agency. http://www.aswm.org/pdf_lib/wetland_restoration_whitepaper_041415.pdf.
Stem, C., R. Margoluis, N. Salafsky, and M. Brown. 2005. Monitoring and evaluation in conservation: A review of trends and approaches. Conservation Biology 19(2):295-309.
Stephens, P.A., S.W. Buskirk, G.D. Hayward, and C. Martínez del Rio. 2007. A call for statistical pluralism answered. Journal of Applied Ecology 44(2):461-463.
Stewart-Oaten, A., 1996. Goals in environmental monitoring. Pp.17-27 in Detecting ecological impacts: Concepts and applications in coastal habitats. C.W. Osenberg and R.J. Schmitt, eds. Amsterdam: Elsevier.
Stewart-Oaten, A., W.W. Murdoch, and K.R. Parker. 1986. Environmental impact assessment: “Pseudoreplication” in time? Ecology, 67(4): 929-940.
Steyer, G.D. 2010. Coastwide Reference Monitoring System (CRMS): US Geological Survey Fact Sheet 2010-3018. Washington, DC: US Geological Survey.
Steyer, G.D., C.E. Sasser, J.M. Visser, E.M. Swenson, J.A. Nyman, and R.C. Raynie. 2003. A proposed coast-wide reference monitoring system for evaluating wetland restoration trajectories in Louisiana. Environmental Monitoring and Assessment 81:107-117.
Steyer, G.D., R.R. Twilley, and R.C. Raynie. 2006. An integrated monitoring approach using multiple reference sites to assess sustainable restoration in coastal Louisiana. In Monitoring Science and Technology Symposium: Unifying Knowledge for Sustainability in the Western Hemisphere. 2004 September 20-24; Denver, CO. Proceedings RMRS-P-42CD. C. Aguirre-Bravo, P.J. Pellicane, D.P. Burns, and S. Draggan, eds. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station.
Stoddard, J.L., D.P. Larsen, C.P. Hawkins, R.K. Johnson, and R.H. Norris. 2006. Setting exceptions for the ecological condition of streams: The concept of reference condition. Ecological Applications 16:1267-1276.
Suding, K.N. and R.J. Hobbs. 2009. Threshold models in restoration and conservation: A developing framework. Trends in Ecology and Evolution 24:271-279.
Suding, K.N., 2011. Toward an era of restoration in ecology: Successes, failures, and opportunities ahead. Annual Review of Ecology, Evolution, and Systematics 42(1):465.
Sumaila, U.R., A.M. Cisneros-Montemayor, A. Dyck, L. Huang, W. Cheung, J. Jacquet, K. Kleisner, V. Lam, A. McCrea-Strub, W. Swartz, R. Watson, D. Zeller, and D. Pauly. 2012. Impact of the Deepwater Horizon well blowout on the economics of US Gulf fisheries. Canadian Journal of Fisheries and Aquatic Sciences 69(3):499-510.
Swannack, T.M., J.C. Fischenich, and D.J. Tazik. 2012. Ecological modeling guide for ecosystem restoration and management. No. ERDC/EL-TR-12-18. Vicksburg, MS: U.S. Army Corps of Engineers Engineer Research and Development Center.
Tallis, H., P.S. Levin, M. Ruckelshaus, S.E. Lester, K.L. McLeod, D.L. Fluharty, and B.S. Halpern. 2010. The many faces of ecosystem-based management: Making the process work today in real places. Marine Policy 34(2):340-348.
Tamarisk Coalition. 2014. Funding Challenges for Riparian Restoration Practitioners: Survey Results Summary. http://www.tamariskcoalition.org/sites/default/files/resource-center-documents/TC_Funding_Survey_Summary_Handout.pdf.
Tapio, P., R. Willamo. 2008. Developing interdisciplinary environmental frameworks. Ambio 37(2):125-33.
Tarnecki, J.H., A.A. Wallace, J.D. Simons, and C.H. Ainsworth. 2016. Progression of a Gulf of Mexico food web supporting Atlantis ecosystem model development. Fisheries Research 179:237-250.
Tear, T.H., P. Kareiva, P.L. Angermeier, P. Comer, B. Czech, R. Kautz, L. Landon, D. Mehlman, K. Murphy, M. Ruckelshaus, J.M. Scott, and G. Wilhere. 2005. How Much Is Enough? The Recurrent Problem of Setting Measurable Objectives in Conservation. BioScience 55(10):835-849.
Tempest, J.A., G.L. Harvey, and K.L. Spencer. 2015. Modified sediments and subsurface hydrology in natural and recreated salt marshes and implications for delivery of ecosystem services. Hydrological Processes 29(10):2346-2357.
Thayer, G.W., T.A. McTigue, R. J. Bellmer, F.M. Burrows, D.H. Merkey, A.D. Nickens, S.J. Lozano, P.F. Gayaldo, P.J. Polmateer, and P.T. Pinit. 2003. Science-Based Restoration Monitoring of Coastal Habitats, Volume One: A Framework for Monitoring Plans Under the Estuaries and Clean Waters Act of 2000 (Public Law 160-457). NOAA Coastal Ocean Program Decision Analysis Series No. 23. Silver Spring, MD: NOAA National Centers for Coastal Ocean Science.
Thayer, G.W., T.A. McTigue, R.J. Salz, D.H. Merkey, F.M. Burrows, and P.F. Gayaldo, eds. 2005. Science-Based Restoration Monitoring of Coastal Habitats, Volume Two: Tools for Monitoring Coastal Habitats. NOAA Coastal Ocean Program Decision Analysis Series No. 23. Silver Spring, MD: NOAA National Centers for Coastal Ocean Science.
Theuerkauf, S. and R. Lipcius. 2016. Validation of a habitat suitability index for oyster restoration. bioRxiv. doi: 10.1101/039875.
Thom, R.M. 2000. Adaptive management of coastal ecosystem restoration projects. Ecological Engineering 15(3):365-372.
Thom, R.M. and K.F. Wellman. 1993. Integrated ecosystem services model. Unpublished data.
Thom, R.M. and K.F. Wellman. 1996. Planning aquatic ecosystem restoration monitoring programs IWR Report 96-R-23. Alexandria, VA: U.S. Army Corps of Engineers, Water Resources Support Center, Institute for Water Resources. http://tidalmarshmonitoring.org/pdf/Thom1996_PlanningAquaticEcosystemResorationMonitoringPrograms.pdf.
Thom, R.M., H.L. Diefenderfer, and K.D. Hofseth. 2004. A framework for risk analysis in ecological projects. IWR Report 04-R-02. Alexandria, VA: U.S. Army Corps of Engineers, Water Resources Support Center, Institute for Water Resources.
Thom, R.M., H.L. Diefenderfer, J.E. Adkins, C. Judd, M.G. Anderson, K.E. Buenau, A.B. Borde, and G.E. Johnson. 2010. Guidelines, processes and tools for coastal ecosystem restoration, with examples from the United States. Plankton and Benthos Research 5(Supplement):185-201. doi: 10.3800/pbr.5. 185
Thorne, K.M., K. J. Buffington, D. L. Elliott-Fisk, and J. Y. Takekawa. 2015. Tidal marsh susceptibility to sea-level rise: Importance of local-scale models. Journal of Fish and Wildlife Management 6(2):290-304.
Tomlinson, B., F. Maynou, A. Sabatés, V. Fuentes, A. Canepa, and S. Sastre. 2015. Systems approach modelling of the interactive effects of fisheries, jellyfish and tourism in the Catalan coast. Estuarine, Coastal, and Shelf Science. doi: 10.1016/j.ecss.2015.11.012.
Tscherning, K., K. Helming, B. Krippner, S. Sieber, and S.G. y Paloma. 2012. Does research applying the DPSIR framework support decision making? Land Use Policy 29(1):102-110.
Tulloch, A.I., I. Chadès, Y. Dujardin, M.J. Westgate, P.W. Lane, and D. Lindenmayer. 2016. Dynamic species co-occurrence networks require dynamic biodiversity surrogates. Ecography. doi:10.1111/ecog. 02143
Tulloch, V.J., A.I .Tulloch, P. Visconti, B.S. Halpern, J.E. Watson, M.C. Evans, N.A. Auerbach, M. Barnes, M. Beger, I. Chadès, S. Giakoumi, E. McDonald-Madden, N.J. Murray, J. Ringma, and H.P. Possingham. 2015. Why do we map threats? Linking threat mapping with actions to make better conservation decisions. Frontiers in Ecology and the Environment 13(2):91-99.
Turner, R.E., N.N. Rabalais, and D. Justic. 2008. Gulf of Mexico hypoxia: Alternate states and a legacy. Environmental Science and Technology 42: 2323-2327.
Twilley, R.R. 2003. Conceptual Ecological Models for Planning and Evaluation of LCA Restoration Program. Pp. 1-8 in Coastal Louisiana Ecosystem Assessment and Restoration (CLEAR) Model of Louisiana Coastal Area (LCA) Comprehensive Ecosystem Restoration Plan. Volume I: Tasks. R.R. Twilley, ed. Baton Rouge, LA: Department of Natural Resources, Coastal Restoration Division.
Underwood, A.J. 1991. Beyond BACI: designs for detecting human environmental impacts on temporal variations in natural populations.
Australian Journal of Marine and Freshwater Restoration 42: 569-587.
Underwood, A.J. 1993. The mechanics of spatially replicated sampling programmes to detect environmental impacts in a variable world. Australian Journal of Ecology 18:99-116.
Underwood, A.J. 1994. On beyond BACI: Sampling designs that might reliably detect environmental disturbances. Ecological Applications 4: 3-15.
Unglaub, B., S. Steinfartz, A. Drechsler, and B.R. Schmidt. 2015. Linking habitat suitability to demography in a pond-breeding amphibian. Frontiers in Zoology 12(9). doi: 10.1186/s12983-015-0103-3.
Upton, H.F. 2011. The Deepwater Horizon Oil Spill and the Gulf of Mexico Fishing Industry. Washington, DC: Congressional Research Service. http://fpc.state.gov/documents/organization/159014.pdf.
USACE (U.S. Army Corps of Engineers) and SFWMD (South Florida Water Management District). 2012. Central and Southern Florida Project Comprehensive Everglades Restoration Plan Biscayne Bay Coastal Wetlands Phase 1. Final Integrated Project Implementation Report and Environmental Impact Statement. Jacksonville, FL: U.S. Army Corps of Engineers.
USACE and SFWMD. 2014. Comprehensive Everglades Restoration Plan Central Everglades Planning Project. Final Integrated Project Implementation Report and Environmental Impact Statement. Jacksonville, FL: U.S. Army Corps of Engineers.
USDOJ (U.S. Department of Justice). 2016. Fact Sheet: Consent decree with BP for the Deepwater Horizon/Macondo Well oil spill. https://www.justice.gov/enrd/deepwaterhorizon.
USFWS (U.S. Fish and Wildlife Service). 1980. Habitat Evaluation Procedures Handbook. 09.15.1980 Release 4-80. Washington, DC: Division of Ecological Services, U.S. Fish and Wildlife Service, Department of the Interior.
USGS (U.S. Geological Survey). 2010. Coastwide Reference Monitoring System (CRMS). Factsheet 2010-3018. http://pubs.usgs.gov/fs/2010/3018/pdf/FS2010-3018.pdf.
Van Dolah, F.M. 2000. Marine algal toxins: Origins, health effects, and their increased occurrence. Environmental Health Perspectives 108(Supplement 1):133-141.
Van Horne, B. 1983. Density as a misleading indicator of habitat quality. Journal of Wildlife Management 893-901.
Vasslides, J.M., and O.P. Jensen. 2016. Fuzzy cognitive mapping in support of integrated ecosystem assessments: Developing a shared conceptual model among stakeholders. Journal of Environmental Management 166:348-356.
Ventura, D., M. Bruno, G.J. Lasinio, A. Belluscio, and G. Ardizzone. 2016. A low-cost drone based application for identifying and mapping of coastal fish nursery grounds. Estuarine, Coastal, and Shelf Science 171:85-98.
Vines, T.H., A.Y.K. Albert, R.L. Andrew, F. Débarre, D.G. Bock, M.T. Franklin, K.J. Gilbert, J.-S. Moore, S. Renaut, and D.J. Rennison. 2014. The availability of research data declines rapidly with article age. Current Biology 24(1):94-97. doi:10.1016/j.cub.2013. 11.014.
Visser, J. M., S.M. Duke-Sylvester, J. Carter, and W.P. Broussard III. 2013. A computer model to forecast wetland vegetation changes resulting from restoration and protection in coastal Louisiana. Journal of Coastal Research 67(sp1):51-59.
Volety, A.K., M. Savarese, S.G. Tolley, W.S. Arnold, P. Sime, P. Goodman, R.H. Chamberlain, and P.H. Doering. 2009. Eastern oysters (Crassostrea virginica) as an indicator for restoration of everglades ecosystems. Ecological Indicators 9S:S120-S136.
Wabnitz, C.C., S. Andréfouët, D. Torres-Pulliza, F.E. Müller-Karger, and P.A. Kramer. 2008. Regional-scale seagrass habitat mapping in the wider Caribbean region using Landsat sensors: Applications to conservation and ecology. Remote Sensing of Environment 112:3455-3467.
Waldbusser, G.G. and J.E. Salisbury. 2014. Ocean acidification in the coastal zone from an organism’s perspective: Multiple system parameters, frequency domains, and habitats. Annual Reviews in Marine Science 6: 221-247.
Waldbusser, G.G., E.N. Powell, and R. Mann. 2013. Ecosystem effects of shell aggregations and cycling in coastal waters: An example of Chesapeake Bay oyster reefs. Ecology 94:895-903.
Warren, J.D., and B.J. Peterson, 2007. Classification of estuarine bottom habitat and vegetation canopy height using backscatter intensity from an acoustic doppler current profiler. Estuarine, Coastal, and Shelf Science 72: 53-62.
Water Institute of the Gulf. 2013. Adaptive Management Framework for Coastal Louisiana. Baton Rouge, LA: Water Institute of the Gulf. http://thewaterinstitute.org/files/pdfs/Adaptive%20Management%20Framework%20_FINAL.pdf.
Weinstein, M.P., J.H. Balletto, J.M. Teal, and D.F. Ludwig. 1997. Success criteria and adaptive management for a large-scale wetland restoration project. Wetlands Ecology and Management 4(2):111-127.
Weinstein, M.P., S.Y. Litvin, and J.M. Krebsc. 2014. Restoration ecology: Ecological fidelity, restoration metrics, and a systems perspective. Ecological Engineering 65:71–87.
Wells, R.S., J.B. Allen, S. Hofmann, K. Bassos-Hull, D.A. Fauquier, N.B. Barros, R.E. DeLynn, G. Sutton, V. Socha, and M.D. Scott. 2008. Consequences of injuries on survival and reproduction of common bottlenose dolphins (Tursiops truncatus) along the west coast of Florida. Marine Mammal Science 24:774-794.
White, D., and S. Fennessy. 2005. Modeling the suitability of wetland restoration potential at the watershed scale. Ecological Engineering 24:359-377.
White, M.J., C. Santhi, N. Kannan, J.G. Arnold, D. Harmel, L. Norfleet, P. Allen, M. DiLuzio, X. Wang, J. Atwood, and E. Haney. 2014. Nutrient delivery from the Mississippi River to the Gulf of Mexico and effects of cropland conservation. Journal of Soil and Water Conservation 69(1):26-40.
Wicherts, J.M., D. Borsboom, J. Kats, and D. Molenaar. 2006. The poor availability of psychological research data for reanalysis. American Psychologist 61(7):726.
Widis, D.C., T.K. BenDor, and M. Deegan. 2015. Prioritizing wetland restoration sites: A review and application to a large-scale coastal restoration program. Ecological Restoration 33(4):358-377.
Wilberg, M. J., M.E. Livings, J.S. Barkman, B.T. Morris, and J.M. Robinson. 2011. Overfishing, disease, habitat loss, and potential extirpation of oysters in upper Chesapeake Bay. Marine Ecology Progress Series 436:131-144.
Wilberg, M.J., J.R. Wiedenmann, and J.M. Robinson. 2013. Sustainable exploitation and management of autogenic ecosystem engineers: Application to oysters in Chesapeake Bay. Ecological Applications 23(4):766-776.
Wildish, D.J., G.B.J. Fader, P. Lawton, and A.J. MacDonald. 1998. The acoustic detection and characteristics of sublittoral bivalve reefs in the Bay of Fundy. Continental Shelf Research 18:105-113.
Wilhere, G.F. 2002. Adaptive management in habitat conservation plans. Conservation Biology 16, 20–29
Wilhere, G.F. 2008. The how-much-is-enough myth. Conservation Biology 22: 514-517. doi: 10.1111/j.1523-1739.2008.00926.x.
Williams, B.K., 2011a. Adaptive management of natural resources framework and issues. Journal of Environmental Management 92(5):1346-1353.
Williams, B.K., 2011b. Passive and active adaptive management: Approaches and an example. Journal of Environmental Management 92(5):1371-1378.
Williams, B.K., and E.D. Brown. 2012. Adaptive Management: The U.S. Department of the Interior Applications Guide. Washington, DC: Adaptive Management Working Group, U.S. Department of the Interior.
Williams, B.K., R.C. Szaro, and C.D. Shapiro. 2009. Adaptive Management: The U.S. Department of the Interior Technical Guide. Washington, DC: Adaptive Management Working Group, U.S. Department of the Interior.
Wilson, B., H. Arnold, G. Bearzi, C.M. Fortuna, R. Gaspar, S. Ingram, C. Liret, S. Pribanic, A.J. Read, V. Ridoux, K. Schneider, K.W. Urian, R.S. Wells, C. Wood, P.M. Thompson, and P.S. Hammond. 1999. Epidermal disease in bottlenose dolphins: Impacts of natural and anthropogenic factors. Proceedings of the Royal Society of London B: 256:1077-1083.
Wingard, G.L., and J.J. Lorenz. 2014. Integrated conceptual ecological model and habitat indices for the southwest Florida coastal wetlands. Ecological Indicators 44:92-107.
Witherington, B.E., and K.A. Bjorndal. 1991. Influences of artificial lighting on the seaward orientation of hatchling loggerhead turtles Caretta caretta. Biological Conservation 55:139-149.
Woolley, A.W., C.F. Chabris, A. Pentland, N. Hashmi, T.W. Malone. 2010. Evidence for a collective intelligence factor in the performance of human groups. Science 330:686-688.
Woolsey, S., F. Capelli, T.O.M. Gonser, E. Hoehn, M. Hostmann, B. Junker, A. Paetzold, C. Roulier, S. Schweizer, S.D. Tiegs, and K. Tockner. 2007. A strategy to assess river restoration success. Freshwater Biology 52(4):752-769.
Wortley, L., J.-M. Hero, and M. Howes. 2013. Evaluating ecological restoration success: A
review of the literature. Restoration Ecology 21:537-543.
Young, T.P., D.A. Petersen, and J.J. Clary. 2005. The ecology of restoration: Historical links, emerging issues and unexplored realms. Ecology letters 8(6):662-673.
Zedler, J.B., and J.C. Callaway. 1999. Tracking wetland restoration: Do mitigation sites follow desired trajectories? Restoration Ecology 7(1):69-73.
zu Ermgassen, P.S., M.D. Spalding, B. Blake, L.D. Coen, B. Dumbauld, S. Geiger, J.H. Grabowski, R. Grizzle, M. Luckenbach, K. McGraw, W. Rodney, J.L. Ruesink, S.P. Powers, and R. Brumbaugh. 2012. Historical ecology with real numbers: Past and present extent and biomass of an imperilled estuarine habitat. Proceedings of the Royal Society of London B: Biological Sciences 279(1742): 3393-3400.
This page intentionally left blank.