Suggested Citation:"Appendix E: Acronyms and Abbreviations." National Academies of Sciences, Engineering, and Medicine. 2020. Next Steps for Functional Genomics: Proceedings of a Workshop. Washington, DC: The National Academies Press. doi: 10.17226/25780.
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Appendix E
Acronyms and Abbreviations
| ATAC-seq | assay for transposase-accessible chromatin using sequencing |
| Ca++ | calcium ion |
| ChIP-seq | chromatin immunoprecipitation sequencing |
| ChRO-seq | chromatin run-on and sequencing |
| CITE-seq | cellular indexing of transcriptomes and epitopes by sequencing |
| ConA | Concanavalin A |
| COX | cytochrome c oxidase |
| CRISPR | clustered regularly interspaced short palindromic repeats |
| CUT&RUN | cleavage under targets and release using nuclease |
| CUT&Tag | cleavage under targets and tagmentation |
| CZI | Chan Zuckerberg Initiative |
| DGRP | Drosophila melanogaster Genetic Reference Panel |
| EDGE | Enabling Discovery through GEnomic Tools |
| ENCODE | Encyclopedia of DNA Elements |
| eQTL | expression quantitative trait locus |
| FGF | fibroblast growth factor |
| GFP | green fluorescent protein |
| GO | gene ontology |
| GTEx | Genotype-Tissue Expression |
Suggested Citation:"Appendix E: Acronyms and Abbreviations." National Academies of Sciences, Engineering, and Medicine. 2020. Next Steps for Functional Genomics: Proceedings of a Workshop. Washington, DC: The National Academies Press. doi: 10.17226/25780.
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| GWAS | genome-wide association study |
| GxE | genotype-by-environment |
| HCA | Human Cell Atlas |
| HTS | high-throughput screening |
| IBD | inflammatory bowel disease |
| ICDA | International Common Disease Alliance |
| ILC | innate lymphoid cell |
| LNCRNA | long non-coding RNA |
| LPS | lipopolysaccharide |
| MAPK | mitogen-activated protein kinase |
| MNase | micrococcal nuclease |
| mRNA | messenger RNA |
| NIH | National Institutes of Health |
| NSF | National Science Foundation |
| pA-MNASE | protein A-micrococcal nuclease |
| pQTL | protein quantitative trait locus |
| qPCR | quantitative polymerase chain reaction |
| QTL | quantitative trait locus |
| RNA-seq | RNA-sequencing |
| SHR | shortroot |
| shRNA | short-hairpin RNA |
| SNP | single nucleotide polymorphism |
| SQR | sulfide-quinone reductase |
| STARmap | spatially-resolved transcript amplicon readout mapping |
| TAD | topologically associated domain |
| TF | transcription factor |
| UIUC | University of Illinois at Urbana-Champaign |
| V1aR | vasopressin receptor 1a |
| WT | wild-type |
