References

Asthagiri, A.R., C.A. Reinhart, A.F. Horwitz, and D.A. Lauffenburger. 2000. The role of transient ERK2 signals in fibronectin- and insulin-mediated DNA synthesis, Journal of Cell Science 113:4499-4510.


Dayan, P., and L. Abbott. 2001. Theoretical Neuroscience: Computational and Mathematical Modeling of Neural Systems. Cambridge, Mass.: MIT Press.

Donahue, J.K., A.W. Heldman, H. Fraser, A.D. McDonald, J.M. Miller, J.J. Rade, T. Eschenhagen, and E. Marbán. 2000. Focal modification of electrical conduction in the heart by viral gene transfer, Nature Medicine 6:1395-1398.

Dowling, H.F. 1977. Fighting Infection. Cambridge, Mass.: Harvard University Press.

Duggan, D.J., M. Bittner, Y. Chen, P. Meltzer, and J.M. Trent. 1999. Expression profiling using cDNA microarrays, Nature Genetics 21:10-14.


Garfinkel, A., O. Voroshilovsky, Y.-H. Kim, M. Yashima, T-J. Wu, R. Doshi, H.S. Karagueuzian, J.N. Weiss, and P.-S. Chen. 2000. Prevention of ventricular fibrillation by flattening cardiac restitution, Proceedings of the National Academy of Sciences 97:6061-6066.

Grakoui, A., S.K. Bromley, C. Sumen, M.M. Davis, A.S. Shaw, P.M. Allen, and M.L. Dustin. 1999. The immunological synapse: a molecular machine controlling T-cell activation, Science 285:221-227.


Hanahan, D., and R.A.Weinberg. 2000. The hallmarks of cancer, Cell 100:57.

Holt, G.R., G.W. Softky, C. Koch, and R.J. Douglas. 1996. Comparison of discharge variability in vitro and in vivo in cat visual cortex neurons, Journal of Neurophysiology 75:1806-1814.


Igoshin, I., A. Mogilner, R. Welch, D. Kaiser, and G. Oster. 2001. Pattern formation and traveling waves in myxobacteria: theory and modeling, Proceedings of the National Academy of Sciences 98(26).


Johnson, D.H., C.M. Gruner, and R.M. Glantz. 2000. Quantifying information transfer in spike generation, Neurocomputing 33:1047-1054.


Kohn, K. 1999. Molecular interaction map of the mammalian cell cycle control and DNA repair systems, Molecular Biology of the Cell 10:2703-2734.

Kovacs, S.J., D.M. McQueen, and C.S. Peskin. 2001. Modeling cardiac fluid dynamics and diastolic function, Philosophical Transactions Royal Society A 359:1299-1314.


Lipsitch, M., C.T. Bergstrom, and B.R. Levin. 2000. The epidemiology of antibiotic resistance in hospitals: paradoxes and prescriptions, Proceedings of the National Academy of Sciences 97:1938-1943.


McKeithan, T.W. 1995. Kinetic proofreading in T-cell receptor signal transduction, Proceedings of the National Academy of Sciences 92:5042-5046.


Nagy, L. 1998. Changing patterns of gene regulation in the evolution of arthropod morphology, American Zoologist 38:818-828.



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Making Sense of Complexity: Summary of the Workshop on Dynamical Modeling of Complex Biomedical Systems References Asthagiri, A.R., C.A. Reinhart, A.F. Horwitz, and D.A. Lauffenburger. 2000. The role of transient ERK2 signals in fibronectin- and insulin-mediated DNA synthesis, Journal of Cell Science 113:4499-4510. Dayan, P., and L. Abbott. 2001. Theoretical Neuroscience: Computational and Mathematical Modeling of Neural Systems. Cambridge, Mass.: MIT Press. Donahue, J.K., A.W. Heldman, H. Fraser, A.D. McDonald, J.M. Miller, J.J. Rade, T. Eschenhagen, and E. Marbán. 2000. Focal modification of electrical conduction in the heart by viral gene transfer, Nature Medicine 6:1395-1398. Dowling, H.F. 1977. Fighting Infection. Cambridge, Mass.: Harvard University Press. Duggan, D.J., M. Bittner, Y. Chen, P. Meltzer, and J.M. Trent. 1999. Expression profiling using cDNA microarrays, Nature Genetics 21:10-14. Garfinkel, A., O. Voroshilovsky, Y.-H. Kim, M. Yashima, T-J. Wu, R. Doshi, H.S. Karagueuzian, J.N. Weiss, and P.-S. Chen. 2000. Prevention of ventricular fibrillation by flattening cardiac restitution, Proceedings of the National Academy of Sciences 97:6061-6066. Grakoui, A., S.K. Bromley, C. Sumen, M.M. Davis, A.S. Shaw, P.M. Allen, and M.L. Dustin. 1999. The immunological synapse: a molecular machine controlling T-cell activation, Science 285:221-227. Hanahan, D., and R.A.Weinberg. 2000. The hallmarks of cancer, Cell 100:57. Holt, G.R., G.W. Softky, C. Koch, and R.J. Douglas. 1996. Comparison of discharge variability in vitro and in vivo in cat visual cortex neurons, Journal of Neurophysiology 75:1806-1814. Igoshin, I., A. Mogilner, R. Welch, D. Kaiser, and G. Oster. 2001. Pattern formation and traveling waves in myxobacteria: theory and modeling, Proceedings of the National Academy of Sciences 98(26). Johnson, D.H., C.M. Gruner, and R.M. Glantz. 2000. Quantifying information transfer in spike generation, Neurocomputing 33:1047-1054. Kohn, K. 1999. Molecular interaction map of the mammalian cell cycle control and DNA repair systems, Molecular Biology of the Cell 10:2703-2734. Kovacs, S.J., D.M. McQueen, and C.S. Peskin. 2001. Modeling cardiac fluid dynamics and diastolic function, Philosophical Transactions Royal Society A 359:1299-1314. Lipsitch, M., C.T. Bergstrom, and B.R. Levin. 2000. The epidemiology of antibiotic resistance in hospitals: paradoxes and prescriptions, Proceedings of the National Academy of Sciences 97:1938-1943. McKeithan, T.W. 1995. Kinetic proofreading in T-cell receptor signal transduction, Proceedings of the National Academy of Sciences 92:5042-5046. Nagy, L. 1998. Changing patterns of gene regulation in the evolution of arthropod morphology, American Zoologist 38:818-828.

OCR for page 31
Making Sense of Complexity: Summary of the Workshop on Dynamical Modeling of Complex Biomedical Systems Sager, B., and D. Kaiser. 1993. Two cell-density domains within the Myxococcus xanthus fruiting body, Proceedings of the National Academy of Sciences 90:3690-3694. Tusher, V.G., R. Tibshirani, and G. Chu. 2001. Significance analysis of microarrays applied to the ionizing radiation response, Proceedings of the National Academy of Sciences 98:5116-5121. von Dassow, G., E. Meir, E.M. Munro, and G. Odell. 2000. The segment polarity network is a robust developmental module, Nature 406:188-192. Web Sites Referenced in the Text Emery Brown: http://neurostat.mgh.harvard.edu/brown/emeryhomepage.htm Byron Goldstein: http://www.t10.lanl.gov/profiles/goldstein.html Don Johnson: http://www.ece.rice.edu/~dhj/#auditory Douglas Lauffenburger: http://web.mit.edu/cbe/dallab/Research.html John Rinzel: http://www.cns.nyu.edu/corefaculty/Rinzel.html Terry Speed: http://www.stat.Berkeley.EDU/users/terry/zarray/Html/index.html